2Y9J | pdb_00002y9j

THREE-DIMENSIONAL MODEL OF SALMONELLA'S NEEDLE COMPLEX AT SUBNANOMETER RESOLUTION


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZSCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
UA [auth u]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
UA [auth u]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
TA [auth t]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
TA [auth t]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
SA [auth s]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
SA [auth s]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
RA [auth r]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
RA [auth r]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
QA [auth q]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
QA [auth q]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
PA [auth p]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
PA [auth p]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
OA [auth o]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
OA [auth o]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
NA [auth n]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
NA [auth n]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
KA [auth k]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
KA [auth k]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZPkinase,Pkinase_Ce2y9jZ1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
YRibonuc_L-PSPe2y9jY2 A: beta barrelsX: N-terminal beta-sandwich domain in anthrax protective antigenH: N-terminal beta-sandwich domain in anthrax protective antigenT: N-terminal beta-sandwich domain in anthrax protective antigenF: Ribonuc_L-PSPECOD (v294.2)
VA [auth v]Pkinase,Pkinase_Ce2y9jv1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
UA [auth u]Pkinase,Pkinase_Ce2y9ju1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
TA [auth t]Pkinase,Pkinase_Ce2y9jt1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
SA [auth s]Pkinase,Pkinase_Ce2y9js1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
RA [auth r]Pkinase,Pkinase_Ce2y9jr1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
QA [auth q]Pkinase,Pkinase_Ce2y9jq1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
PA [auth p]Pkinase,Pkinase_Ce2y9jp1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
OA [auth o]Pkinase,Pkinase_Ce2y9jo1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
NA [auth n]Pkinase,Pkinase_Ce2y9jn1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
MA [auth m]Pkinase,Pkinase_Ce2y9jm1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
LA [auth l]Pkinase,Pkinase_Ce2y9jl1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
KA [auth k]Pkinase,Pkinase_Ce2y9jk1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
JA [auth j]Pkinase,Pkinase_Ce2y9jj1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
IA [auth i]Pkinase,Pkinase_Ce2y9ji1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
HA [auth h]Pkinase,Pkinase_Ce2y9jh1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
GA [auth g]Pkinase,Pkinase_Ce2y9jg1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
FA [auth f]Pkinase,Pkinase_Ce2y9jf1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
EA [auth e]Pkinase,Pkinase_Ce2y9je1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
DA [auth d]Pkinase,Pkinase_Ce2y9jd1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
CA [auth c]Pkinase,Pkinase_Ce2y9jc1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
BA [auth b]Pkinase,Pkinase_Ce2y9jb1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
AA [auth a]Pkinase,Pkinase_Ce2y9ja1 A: beta barrelsX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Pkinase,Pkinase_CECOD (v294.2)
XFapy_DNA_glycoe2y9jX4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
WFapy_DNA_glycoe2y9jW4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
VFapy_DNA_glycoe2y9jV4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
UFapy_DNA_glycoe2y9jU4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
TFapy_DNA_glycoe2y9jT4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
SFapy_DNA_glycoe2y9jS4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
RFapy_DNA_glycoe2y9jR4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
QFapy_DNA_glycoe2y9jQ4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
PFapy_DNA_glycoe2y9jP4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
OFapy_DNA_glycoe2y9jO4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
NFapy_DNA_glycoe2y9jN4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
MFapy_DNA_glycoe2y9jM4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
LFapy_DNA_glycoe2y9jL4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
KFapy_DNA_glycoe2y9jK4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
JFapy_DNA_glycoe2y9jJ4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
IFapy_DNA_glycoe2y9jI4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
HFapy_DNA_glycoe2y9jH4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
GFapy_DNA_glycoe2y9jG4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
FFapy_DNA_glycoe2y9jF4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
EFapy_DNA_glycoe2y9jE4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
DFapy_DNA_glycoe2y9jD4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
CFapy_DNA_glycoe2y9jC4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
BFapy_DNA_glycoe2y9jB4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)
AFapy_DNA_glycoe2y9jA4 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: Fapy_DNA_glycoECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01514Secretory protein of YscJ/FliF RBM domain (YscJ_FliF)Secretory protein of YscJ/FliF RBM domainThis entry represents the RBM-like domain from FliF and related proteins. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought ...This entry represents the RBM-like domain from FliF and related proteins. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flageller proteins, based on the similarity to YscJ proteins [2].
Domain
A, B, C, D, E
PF09480Type III secretion system protein PrgH-EprH (PrgH) (PrgH)Type III secretion system protein PrgH-EprH (PrgH)- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR006182Flagellar M-ring, N-terminalDomain
IPR045851AMP-binding enzyme domain superfamilyHomologous Superfamily
IPR043427Lipoprotein YscJ/Flagellar M-ring proteinFamily
IPR003282Type III secretion system lipoprotein SctJFamily
A, B, C, D, E
IPR019029Type III secretion system, PrgH/EprH-likeFamily
A, B, C, D, E
IPR013387Type III secretion system, PrgH/EprHFamily