2YPW | pdb_00002ypw

Atomic model for the N-terminus of TraO fitted in the full-length structure of the bacterial pKM101 type IV secretion system core complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
NCagXe2ypwN1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
MCagXe2ypwM1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
LCagXe2ypwL1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
KCagXe2ypwK1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
JCagXe2ypwJ1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
ICagXe2ypwI1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
HCagXe2ypwH1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
GCagXe2ypwG1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
FCagXe2ypwF1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
ECagXe2ypwE1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
DCagXe2ypwD1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
CCagXe2ypwC1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
BCagXe2ypwB1 A: alpha arraysX: DEATH domainH: HTHT: winged helix domainF: CagXECOD (v295)
ACagXe2ypwA1 A: alpha arraysX: beta-GraspH: NudixT: NudixF: CagXECOD (v295)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR033645VirB9/CagX/TrbG, C-terminalDomain
A, B, C, D, E
IPR038161VirB9/CagX/TrbG, C-terminal domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR010258Conjugal transfer TrbG/VirB9/CagXFamily