3A5Z
Crystal structure of Escherichia coli GenX in complex with elongation factor P
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d3a5zb1 | All beta proteins | SH3-like barrel | Translation proteins SH3-like domain | automated matches | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d3a5zb2 | All beta proteins | OB-fold | Nucleic acid-binding proteins | automated matches | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Class II aaRS and biotin synthetases | 8098374 | 3000058 | SCOP2B (2022-06-29) |
C | SCOP2 Family | Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain | 8098373 | 4001782 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Class II aaRS and biotin synthetases | 8098374 | 3000058 | SCOP2 (2022-06-29) |
G | SCOP2B Superfamily | Class II aaRS and biotin synthetases | 8098374 | 3000058 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Class II aaRS and biotin synthetases | 8098374 | 3000058 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | tRNA-synt_2 | e3a5zA1 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: tRNA-synt_2 | ECOD (1.6) |
C | tRNA-synt_2 | e3a5zC1 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: tRNA-synt_2 | ECOD (1.6) |
G | tRNA-synt_2 | e3a5zG1 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: tRNA-synt_2 | ECOD (1.6) |
E | tRNA-synt_2 | e3a5zE1 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: tRNA-synt_2 | ECOD (1.6) |
B | EFP | e3a5zB1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: EFP | ECOD (1.6) |
B | EFP_N | e3a5zB2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EFP_N | ECOD (1.6) |
F | EFP_N | e3a5zF1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EFP_N | ECOD (1.6) |
H | EFP | e3a5zH1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: EFP | ECOD (1.6) |
H | Elong-fact-P_C | e3a5zH2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Elong-fact-P_C | ECOD (1.6) |
H | EFP_N | e3a5zH3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EFP_N | ECOD (1.6) |
D | EFP | e3a5zD1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: EFP | ECOD (1.6) |
D | Elong-fact-P_C | e3a5zD2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Elong-fact-P_C | ECOD (1.6) |
D | EFP_N | e3a5zD3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EFP_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00152 | tRNA synthetases class II (D, K and N) (tRNA-synt_2) | tRNA synthetases class II (D, K and N) | - | Domain | |
PF09285 | Elongation factor P, C-terminal (Elong-fact-P_C) | Elongation factor P, C-terminal | Members of this family of nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology [1]. | Domain | |
PF01132 | Elongation factor P (EF-P) OB domain (EFP) | Elongation factor P (EF-P) OB domain | - | Domain | |
PF08207 | Elongation factor P (EF-P) KOW-like domain (EFP_N) | Elongation factor P (EF-P) KOW-like domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045864 | Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) | Homologous Superfamily | |
IPR006195 | Aminoacyl-tRNA synthetase, class II | Domain | |
IPR018149 | Lysyl-tRNA synthetase, class II, C-terminal | Domain | |
IPR004364 | Aminoacyl-tRNA synthetase, class II (D/K/N) | Domain | |
IPR004525 | Elongation factor P--(R)-beta-lysine ligase | Family | |
IPR020599 | Translation elongation factor P/YeiP | Family | |
IPR015365 | Elongation factor P, C-terminal | Domain | |
IPR013185 | Translation elongation factor, KOW-like | Domain | |
IPR014722 | Large ribosomal subunit protein uL2, domain 2 | Homologous Superfamily | |
IPR008991 | Translation protein SH3-like domain superfamily | Homologous Superfamily | |
IPR001059 | Translation elongation factor P/YeiP, central | Domain | |
IPR011768 | Translation elongation factor P | Family | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR013852 | Translation elongation factor P/YeiP, conserved site | Conserved Site |