3AU5

Structure of the human myosin-X MyTH4-FERM cassette

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Ubiquitin-like	8091829	3000157	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MyTH4 domain-like	8091827	3002546	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PH domain-like	8091831	3000134	SCOP2B (2022-06-29)
A	SCOP2 Family	MyTH4 domain-like	8048248	4006026	SCOP2 (2022-06-29)
A	SCOP2 Family	FERM domain-like	8091828	4000747	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MyTH4 domain-like	8091827	3002546	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FERM central domain-like	8091830	3001227	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ubiquitin-like	8091829	3000157	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PH domain-like	8091831	3000134	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	FERM_C1_MyoVII	e3au5B4	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: FERM_C1_MyoVII	ECOD (1.6)
B	FERM_M	e3au5B7	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: FERM_M	ECOD (1.6)
B	MyTH4	e3au5B1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: MyTH4	ECOD (1.6)
B	RA_2	e3au5B8	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: RA_2	ECOD (1.6)
A	FERM_C1_MyoVII	e3au5A9	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: FERM_C1_MyoVII	ECOD (1.6)
A	FERM_M	e3au5A7	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: FERM_M	ECOD (1.6)
A	MyTH4	e3au5A1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: MyTH4	ECOD (1.6)
A	RA_2	e3au5A8	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: RA_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.25.40.530	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	MyTH4 domain	CATH (4.3.0)
B	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
B	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
B	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
A	1.25.40.530	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	MyTH4 domain	CATH (4.3.0)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
A	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00788	Ras association (RalGDS/AF-6) domain (RA)	Ras association (RalGDS/AF-6) domain	RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Recent evidence (not yet in MEDLINE) shows that some RA domains do NOT bind RasGTP. Predicted structure [3] similar to that determined [1], and that of th ...	RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Recent evidence (not yet in MEDLINE) shows that some RA domains do NOT bind RasGTP. Predicted structure [3] similar to that determined [1], and that of the RasGTP-binding domain of Raf kinase.	Domain
A, B	PF21989	RA like domain (RA_2)	RA like domain		Domain
A, B	PF00373	FERM central domain (FERM_M)	FERM central domain	This domain is the central structural domain of the FERM domain.	Domain
A, B	PF00784	MyTH4 domain (MyTH4)	MyTH4 domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Myosin-X	cytoskeletal protein binding spectrin binding protein-containing complex binding protein binding binding actin binding actin filament binding cytoskeletal motor activity microfilament motor activity plus-end directed microfilament motor activity ATP-dependent activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding cytoskeletal protein binding spectrin binding protein-containing complex binding protein binding binding actin binding actin filament binding cytoskeletal motor activity microfilament motor activity plus-end directed microfilament motor activity ATP-dependent activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding phosphatidylinositol-3,4,5-trisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding calmodulin binding	regulation of biological process regulation of cellular process positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process positive regulation of cell-cell adhesion cell adhesion cell-cell adhesion regulation of cell-cell adhesion cellular process positive regulation of cellular process cellular response to stimulus response to stimulus regulation of biological process regulation of cellular process positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process positive regulation of cell-cell adhesion cell adhesion cell-cell adhesion regulation of cell-cell adhesion cellular process positive regulation of cellular process cellular response to stimulus response to stimulus signaling signal transduction cell communication developmental process regulation of developmental process regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis localization cellular localization transport establishment of localization in cell cytoskeleton-dependent intracellular transport intracellular transport establishment of localization filopodium assembly regulation of cellular component organization plasma membrane bounded cell projection organization cell projection organization regulation of cell projection organization regulation of cell projection assembly regulation of filopodium assembly plasma membrane bounded cell projection assembly regulation of cellular component biogenesis cellular component organization cellular component biogenesis regulation of plasma membrane bounded cell projection assembly cellular component assembly cellular component organization or biogenesis cell projection assembly regulation of plasma membrane bounded cell projection organization	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle membraneless organelle nuclear lumen cell periphery cell cortex cytoplasm cytosol filopodium tip actin-based cell projection filopodium plasma membrane membrane protein-containing complex cytoskeleton actin cytoskeleton myosin complex neuron projection ruffle somatodendritic compartment cell body neuronal cell body filopodium membrane plasma membrane region cell projection membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A, B	IPR000299	FERM domain	Domain
A, B	IPR001849	Pleckstrin homology domain	Domain
A, B	IPR001609	Myosin head, motor domain-like	Domain
A, B	IPR036124	Class X myosin, motor domain	Domain
A, B	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A, B	IPR019748	FERM central domain	Domain
A, B	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B	IPR000048	IQ motif, EF-hand binding site	Binding Site
A, B	IPR038185	MyTH4 domain superfamily	Homologous Superfamily
A, B	IPR031971	Unconventional myosin-X, coiled coil domain	Domain
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B	IPR019749	Band 4.1 domain	Domain
A, B	IPR000159	Ras-associating domain	Domain
A, B	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A, B	IPR051724	Actin-based Motor Myosin	Family
A, B	IPR041797	Myosin X, FERM domain C-lobe	Domain
A, B	IPR000857	MyTH4 domain	Domain
A, B	IPR040640	Myosin X, N-terminal SH3 domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9HD67	Weight Gain atopic eczema ductal breast carcinoma in situ malignant mesothelioma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma pituitary cancer cystic fibrosis lung cancer medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm psoriasis Down syndrome malignant colon neoplasm Weight Gain atopic eczema ductal breast carcinoma in situ malignant mesothelioma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma pituitary cancer cystic fibrosis lung cancer medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm psoriasis Down syndrome malignant colon neoplasm myopathy ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia ulcerative colitis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.