3B8P | pdb_00003b8p

Fragment of WzzB, Polysaccharide Co-polymerase from Salmonella Typhimurium

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d3b8pe1	Alpha and beta proteins (a+b)	Ferredoxin-like	Bacterial polysaccharide co-polymerase-like	FepE-like	Chain length determinant protein WzzB	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
D	d3b8pd1	Alpha and beta proteins (a+b)	Ferredoxin-like	Bacterial polysaccharide co-polymerase-like	FepE-like	Chain length determinant protein WzzB	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
C	d3b8pc1	Alpha and beta proteins (a+b)	Ferredoxin-like	Bacterial polysaccharide co-polymerase-like	FepE-like	Chain length determinant protein WzzB	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
B	d3b8pb1	Alpha and beta proteins (a+b)	Ferredoxin-like	Bacterial polysaccharide co-polymerase-like	FepE-like	Chain length determinant protein WzzB	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
A	d3b8pa1	Alpha and beta proteins (a+b)	Ferredoxin-like	Bacterial polysaccharide co-polymerase-like	FepE-like	Chain length determinant protein WzzB	(Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	FepE-like	8026621	4001984	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Bacterial polysaccharide co-polymerase-like	8039000	3000641	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	GATase_2	e3b8pE1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: GATase_2	ECOD (develop294)
D	GATase_2	e3b8pD1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: GATase_2	ECOD (develop294)
C	GATase_2	e3b8pC1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: GATase_2	ECOD (develop294)
B	GATase_2	e3b8pB1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: GATase_2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	3.30.1890.10	Alpha Beta	2-Layer Sandwich	Bacterial polysaccharide co-polymerase-like	FepE-like	CATH (4.3.0)
D	3.30.1890.10	Alpha Beta	2-Layer Sandwich	Bacterial polysaccharide co-polymerase-like	FepE-like	CATH (4.3.0)
C	3.30.1890.10	Alpha Beta	2-Layer Sandwich	Bacterial polysaccharide co-polymerase-like	FepE-like	CATH (4.3.0)
B	3.30.1890.10	Alpha Beta	2-Layer Sandwich	Bacterial polysaccharide co-polymerase-like	FepE-like	CATH (4.3.0)
A	3.30.1890.10	Alpha Beta	2-Layer Sandwich	Bacterial polysaccharide co-polymerase-like	FepE-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF02706	Chain length determinant protein (Wzz)	Chain length determinant protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Chain length determinant protein	identical protein binding protein binding binding protein tyrosine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups	lipopolysaccharide biosynthetic process carbohydrate derivative biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process liposaccharide metabolic process lipid biosynthetic process carbohydrate derivative metabolic process primary metabolic process macromolecule biosynthetic process lipopolysaccharide metabolic process polysaccharide metabolic process biosynthetic process metabolic process lipopolysaccharide biosynthetic process carbohydrate derivative biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process liposaccharide metabolic process lipid biosynthetic process carbohydrate derivative metabolic process primary metabolic process macromolecule biosynthetic process lipopolysaccharide metabolic process polysaccharide metabolic process biosynthetic process metabolic process cellular process macromolecule metabolic process lipid metabolic process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR050445	Bacterial polysaccharide biosynthesis and export	Family
A, B, C, D, E	IPR003856	Polysaccharide chain length determinant, N-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.