3BMA | pdb_00003bma

Crystal structure of D-alanyl-lipoteichoic acid synthetase from Streptococcus pneumoniae R6

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	DltD-like	8046661	4005223	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SGNH hydrolase-like	8103578	3001315	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	SGNH hydrolase-like	8103578	3001315	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SGNH hydrolase-like	8103578	3001315	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SGNH hydrolase-like	8103578	3001315	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	SGNH hydrolase-like	8103578	3001315	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	SGNH hydrolase-like	8103578	3001315	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e3bmaA1	A: RuvA-C	X: Hypothetical protein MTH1615	H: Hypothetical protein MTH1615	T: Laminin_EGF	F:	ECOD (20:10:01)
B		e3bmaB1	A: GIY-YIG endonuclease	X: GIY-YIG endonuclease	H: GIY-YIG endonuclease	T: GIY-YIG	F:	ECOD (20:10:01)
C		e3bmaC1	A: GIY-YIG endonuclease	X: GIY-YIG endonuclease	H: GIY-YIG endonuclease	T: GIY-YIG	F:	ECOD (20:10:01)
D		e3bmaD1	A: GIY-YIG endonuclease	X: GIY-YIG endonuclease	H: GIY-YIG endonuclease	T: GIY-YIG	F:	ECOD (20:10:01)
E		e3bmaE1	A: GIY-YIG endonuclease	X: GIY-YIG endonuclease	H: GIY-YIG endonuclease	T: GIY-YIG	F:	ECOD (20:10:01)
F		e3bmaF1	A: GIY-YIG endonuclease	X: GIY-YIG endonuclease	H: GIY-YIG endonuclease	T: GIY-YIG	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF04914	DltD protein (DltD)	DltD protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	D-alanyl-lipoteichoic acid synthetase	-	carbohydrate derivative biosynthetic process teichoic acid biosynthetic process peptidoglycan-based cell wall biogenesis small molecule biosynthetic process cell wall organization or biogenesis carbohydrate derivative metabolic process organic acid biosynthetic process organic acid metabolic process macromolecule biosynthetic process cellular component biogenesis cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process lipoteichoic acid biosynthetic process carbohydrate derivative biosynthetic process teichoic acid biosynthetic process peptidoglycan-based cell wall biogenesis small molecule biosynthetic process cell wall organization or biogenesis carbohydrate derivative metabolic process organic acid biosynthetic process organic acid metabolic process macromolecule biosynthetic process cellular component biogenesis cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process lipoteichoic acid biosynthetic process cellular process metabolic process small molecule metabolic process cellular component organization or biogenesis macromolecule metabolic process teichoic acid metabolic process cell wall macromolecule metabolic process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR006998	DltD	Family
A, B, C, D, E A, B, C, D, E, F	IPR023896	D-alanyl-lipoteichoic acid biosynthesis DltD, Firmicutes	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.