3BXZ
Crystal structure of the isolated DEAD motor domains from Escherichia coli SecA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SecA_DEAD | e3bxzA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: SecA_DEAD | ECOD (1.6) |
A | Helicase_C_10 | e3bxzA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Helicase_C_10 | ECOD (1.6) |
B | SecA_DEAD | e3bxzB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: SecA_DEAD | ECOD (1.6) |
B | Helicase_C_10 | e3bxzB4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Helicase_C_10 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21090 | SecA P-loop domain (P-loop_SecA) | SecA P-loop domain | SecA is the preprotein translocase ATPase subunit and a superfamily 2 (SF2) RNA helicase [4]. This entry corresponds to the second P-loop domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011130 | SecA, preprotein cross-linking domain | Domain | |
IPR011116 | SecA Wing/Scaffold | Domain | |
IPR014018 | SecA motor DEAD | Domain | |
IPR020937 | SecA conserved site | Conserved Site | |
IPR044722 | SecA, C-terminal helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR036670 | SecA, preprotein cross-linking domain superfamily | Homologous Superfamily | |
IPR036266 | SecA, Wing/Scaffold superfamily | Homologous Superfamily | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR000185 | Protein translocase subunit SecA | Family | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR004027 | SEC-C motif | Conserved Site | |
IPR011115 | SecA DEAD-like, N-terminal | Domain |