3CIS | pdb_00003cis

The Crystal Structure of Rv2623 from Mycobacterium tuberculosis

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Usp	e3cisH1	A: alpha bundles	X: HAD domain-like	H: HAD domain-related	T: Toprim domain	F: Usp	ECOD (develop294)
G	Exop_C	e3cisG1	A: alpha bundles	X: Thioredoxin-like	H: ClpP/crotonase	T: ClpP/crotonase	F: Exop_C	ECOD (develop294)
F	Exop_C	e3cisF1	A: alpha bundles	X: Thioredoxin-like	H: ClpP/crotonase	T: ClpP/crotonase	F: Exop_C	ECOD (develop294)
E	PEP-utilisers_N	e3cisE1	A: alpha bundles	X: Tautomerase/MIF-like	H: Tautomerase/MIF	T: Tautomerase/MIF	F: PEP-utilisers_N	ECOD (develop294)
E	DUF4982	e3cisE2	A: alpha bundles	X: DP domain	H: DP domain	T: DP domain	F: DUF4982	ECOD (develop294)
D	PEP-utilisers_N	e3cisD1	A: alpha bundles	X: Tautomerase/MIF-like	H: Tautomerase/MIF	T: Tautomerase/MIF	F: PEP-utilisers_N	ECOD (develop294)
D	Usp	e3cisD2	A: alpha bundles	X: HAD domain-like	H: HAD domain-related	T: Toprim domain	F: Usp	ECOD (develop294)
C	PEP-utilisers_N	e3cisC1	A: alpha bundles	X: Tautomerase/MIF-like	H: Tautomerase/MIF	T: Tautomerase/MIF	F: PEP-utilisers_N	ECOD (develop294)
C	Exop_C	e3cisC2	A: alpha bundles	X: Thioredoxin-like	H: ClpP/crotonase	T: ClpP/crotonase	F: Exop_C	ECOD (develop294)
B	PEP-utilisers_N	e3cisB1	A: alpha bundles	X: Tautomerase/MIF-like	H: Tautomerase/MIF	T: Tautomerase/MIF	F: PEP-utilisers_N	ECOD (develop294)
B	Usp	e3cisB2	A: alpha bundles	X: HAD domain-like	H: HAD domain-related	T: Toprim domain	F: Usp	ECOD (develop294)
A	adh_short_C2	e3cisA1	A: alpha bundles	X: UBC-like	H: UBC-like	T: UBC-like	F: adh_short_C2	ECOD (develop294)
A	Usp	e3cisA2	A: alpha bundles	X: HAD domain-like	H: HAD domain-related	T: Toprim domain	F: Usp	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.50.12370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
G	3.40.50.12370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
F	3.40.50.12370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
E	3.40.50.12370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
D	3.40.50.12370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C	3.40.50.12370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	3.40.50.12370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	3.40.50.12370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00582	Universal stress protein family (Usp)	Universal stress protein family	The universal stress protein UspA Swiss:P28242 [1] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditio ...	The universal stress protein UspA Swiss:P28242 [1] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [3] reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP [2], though UspA lacks ATP-binding activity.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Uncharacterized protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	regulation of growth regulation of biological process biological regulation growth developmental process biological process involved in interspecies interaction between organisms dormancy entry of symbiont in host formation of structure involved in a symbiotic process development of symbiont in host dormancy process response to decreased oxygen levels response to stimulus response to hypoxia response to stress regulation of growth regulation of biological process biological regulation growth developmental process biological process involved in interspecies interaction between organisms dormancy entry of symbiont in host formation of structure involved in a symbiotic process development of symbiont in host dormancy process response to decreased oxygen levels response to stimulus response to hypoxia response to stress response to oxygen levels response to abiotic stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane external encapsulating structure cell wall peptidoglycan-based cell wall

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR006015	Universal stress protein A family	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR006016	UspA	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.