3D4J
Crystal structure of Human mevalonate diphosphate decarboxylase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3d4ja1 | Alpha and beta proteins (a+b) | Ribosomal protein S5 domain 2-like | Ribosomal protein S5 domain 2-like | automated matches | automated matches | man (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d3d4ja2 | Alpha and beta proteins (a+b) | Ferredoxin-like | GHMP Kinase, C-terminal domain | automated matches | automated matches | man (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d3d4jb1 | Alpha and beta proteins (a+b) | Ribosomal protein S5 domain 2-like | Ribosomal protein S5 domain 2-like | automated matches | automated matches | man (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d3d4jb2 | Alpha and beta proteins (a+b) | Ferredoxin-like | GHMP Kinase, C-terminal domain | automated matches | automated matches | man (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GHMP_kinases_N_1 | e3d4jA1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: GHMP_kinases_N_1 | ECOD (1.6) |
A | KOG2833 | e3d4jA2 | A: a+b two layers | X: Alpha-beta plaits | H: GHMP Kinase, C-terminal domain (From Topology) | T: GHMP Kinase, C-terminal domain | F: KOG2833 | ECOD (1.6) |
B | GHMP_kinases_N_1 | e3d4jB3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: GHMP_kinases_N_1 | ECOD (1.6) |
B | KOG2833 | e3d4jB4 | A: a+b two layers | X: Alpha-beta plaits | H: GHMP Kinase, C-terminal domain (From Topology) | T: GHMP Kinase, C-terminal domain | F: KOG2833 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.230.10 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
A | 3.30.70.890 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | GHMP kinase, C-terminal domain | CATH (4.3.0) |
B | 3.30.230.10 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
B | 3.30.70.890 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | GHMP kinase, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18376 | Mevalonate 5-diphosphate decarboxylase C-terminal domain (MDD_C) | Mevalonate 5-diphosphate decarboxylase C-terminal domain | Mevalonate diphosphate decarboxylase (EC:4.1.1.33) catalyzes the ATP dependent decarboxylation of mevalonate 5-diphosphate (MVAPP) to form isopentenyl 5-diphosphate. The reaction is required for production of polyisoprenoids and sterols from acetyl-C ... | Domain | |
PF00288 | GHMP kinases N terminal domain (GHMP_kinases_N) | GHMP kinases N terminal domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR053859 | Diphosphomevalonate decarboxylase-like N-terminal domain | Domain | |
IPR036554 | GHMP kinase, C-terminal domain superfamily | Homologous Superfamily | |
IPR029765 | Diphosphomevalonate decarboxylase | Family | |
IPR005935 | Diphosphomevalonate/phosphomevalonate decarboxylase | Family | |
IPR020568 | Ribosomal protein uS5 domain 2-type superfamily | Homologous Superfamily | |
IPR041431 | Mvd1, C-terminal | Domain | |
IPR014721 | Small ribosomal subunit protein uS5 domain 2-type fold, subgroup | Homologous Superfamily |