Crystal structure of SAG506-01, orthorhombic, twinned, crystal 1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | d3dusd_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
| B | d3dusb_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
| C | d3dusc_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
| A | d3dusa_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | WW | e3dusD1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: WW | ECOD (v295.2) |
| B | WW | e3dusB1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: WW | ECOD (v295.2) |
| C | WW | e3dusC1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: WW | ECOD (v295.2) |
| A | WW | e3dusA1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: WW | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| SAG506-01 | VH | Mus musculus (house mouse) | IGHV7-3*02, IGHJ2*02, IGHJ2*03 | V-DOMAIN VH | IG | FV-HEAVY_KAPPA | IMGT (202642-0) | |
| SAG506-01 | V-KAPPA | Mus musculus (house mouse) | IGKV8-21*01, IGKJ1*01, IGKJ2*01, IGKJ5*01 | V-DOMAIN V-KAPPA | IG | FV-HEAVY_KAPPA | IMGT (202642-0) |
SAbDab2 Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| Heavy Chain | IGHV7 | - | 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid | TETRAETHYLENE GLYCOL, 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid | MAGNESIUM ION | TETRAETHYLENE GLYCOL | SAbDab (2026-10-30) | |
| Light Chain | IGKV8 | Kappa | 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid | TETRAETHYLENE GLYCOL, 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid | MAGNESIUM ION | TETRAETHYLENE GLYCOL | SAbDab (2026-10-30) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Ig-like protein | - | - | ||
| antibody Fv fragment SAG506-01 | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR050199 | Immunoglobulin Heavy Variable | Family | |
| IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
| IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
| IPR013106 | Immunoglobulin V-set domain | Domain | |
| IPR007110 | Immunoglobulin-like domain | Domain | |
| IPR050150 | Immunoglobulin Variable Light Chain | Family | |
| IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
| IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
| IPR013106 | Immunoglobulin V-set domain | Domain | |
| IPR003599 | Immunoglobulin domain subtype | Domain | |
| IPR007110 | Immunoglobulin-like domain | Domain |