3EEY | pdb_00003eey

CRYSTAL STRUCTURE OF PUTATIVE RRNA-METHYLASE FROM Clostridium thermocellum

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090810	3000118	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090810	3000118	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090810	3000118	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090810	3000118	SCOP2B (2022-06-29)
F	SCOP2 Family	YtqB-like	8048989	4006296	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090810	3000118	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090810	3000118	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090810	3000118	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090810	3000118	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090810	3000118	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8090810	3000118	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	P2_N	e3eeyJ1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: P2_N	ECOD (develop294)
I	P2_N	e3eeyI1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: P2_N	ECOD (develop294)
H	P2_N	e3eeyH1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: P2_N	ECOD (develop294)
G	P2_N	e3eeyG1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: P2_N	ECOD (develop294)
F	P2_N	e3eeyF1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: P2_N	ECOD (develop294)
E	P2_N	e3eeyE1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: P2_N	ECOD (develop294)
D	P2_N	e3eeyD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: P2_N	ECOD (develop294)
C	P2_N	e3eeyC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: P2_N	ECOD (develop294)
B	P2_N	e3eeyB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: P2_N	ECOD (develop294)
A	ThiS	e3eeyA1	A: alpha bundles	X: Profilin-like	H: sensor domains	T: sensor domains	F: ThiS	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
I	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
H	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
G	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
F	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
E	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
D	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
C	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
B	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
A	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF06962	Putative rRNA methylase (rRNA_methylase)	Putative rRNA methylase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Putative rRNA methylase	transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity	methylation metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR010719	Methyltransferase MnmM-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.