3G4D | pdb_00003g4d

Crystal Structure of (+)-delta-Cadinene Synthase from Gossypium arboreum and Evolutionary Divergence of Metal Binding Motifs for Catalysis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3g4db1	All alpha proteins	alpha/alpha toroid	Terpenoid cyclases/Protein prenyltransferases	automated matches	automated matches	tree cotton (Gossypium arboreum ) [TaxId: 29729 ],	SCOPe (2.08)
B	d3g4db2	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	tree cotton (Gossypium arboreum ) [TaxId: 29729 ],	SCOPe (2.08)
A	d3g4da1	All alpha proteins	alpha/alpha toroid	Terpenoid cyclases/Protein prenyltransferases	automated matches	automated matches	tree cotton (Gossypium arboreum ) [TaxId: 29729 ],	SCOPe (2.08)
A	d3g4da2	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	tree cotton (Gossypium arboreum ) [TaxId: 29729 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	NUDIX	e3g4dB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: NUDIX	ECOD (develop294)
A	Ppx-GppA	e3g4dA1	A: alpha bundles	X: Alpha-beta plaits	H: FAD-dependent thiol oxidase	T: FAD-dependent thiol oxidase	F: Ppx-GppA	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)
B	1.50.10.130	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase	Terpene synthase, N-terminal domain	CATH (4.3.0)
A	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)
A	1.50.10.130	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase	Terpene synthase, N-terminal domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	(+)-delta-cadinene synthase isozyme XC1	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding carbon-oxygen lyase activity, acting on phosphates sesquiterpene synthase activity terpene synthase activity lyase activity catalytic activity carbon-oxygen lyase activity (+)-delta-cadinene synthase activity	diterpenoid metabolic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process diterpenoid biosynthetic process biosynthetic process metabolic process cellular process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR005630	Terpene synthase, metal-binding domain	Domain
A, B	IPR001906	Terpene synthase, N-terminal domain	Domain
A, B	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
A, B	IPR036965	Terpene synthase, N-terminal domain superfamily	Homologous Superfamily
A, B	IPR034741	Terpene cyclase-like 1, C-terminal domain	Domain
A, B	IPR044814	Terpene cyclases, class 1, plant	Family
A, B	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
A, B	IPR050148	Terpene synthase-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.