3GHQ | pdb_00003ghq

Crystal Structure of E. coli W35F BFR mutant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d3ghql_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Bacterioferritin (cytochrome b1)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
K	d3ghqk_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Bacterioferritin (cytochrome b1)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
J	d3ghqj_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Bacterioferritin (cytochrome b1)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
I	d3ghqi_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Bacterioferritin (cytochrome b1)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
H	d3ghqh_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Bacterioferritin (cytochrome b1)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
G	d3ghqg_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Bacterioferritin (cytochrome b1)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
F	d3ghqf_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Bacterioferritin (cytochrome b1)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
E	d3ghqe_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Bacterioferritin (cytochrome b1)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
D	d3ghqd_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Bacterioferritin (cytochrome b1)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
C	d3ghqc_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Bacterioferritin (cytochrome b1)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d3ghqb_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Bacterioferritin (cytochrome b1)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d3ghqa_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Bacterioferritin (cytochrome b1)	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Ferritin-like	8042427	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8042427	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8042427	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8042427	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8042427	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8042427	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8042427	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8042427	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8042427	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8042427	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8042427	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8042427	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	PDEase_I	e3ghqL1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (develop294)
K	PDEase_I	e3ghqK1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (develop294)
J	PDEase_I	e3ghqJ1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (develop294)
I	PDEase_I	e3ghqI1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (develop294)
H	PDEase_I	e3ghqH1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (develop294)
G	PDEase_I	e3ghqG1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (develop294)
F	PDEase_I	e3ghqF1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (develop294)
E	PDEase_I	e3ghqE1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (develop294)
D	PDEase_I	e3ghqD1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (develop294)
C	PDEase_I	e3ghqC1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (develop294)
B	PDEase_I	e3ghqB1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (develop294)
A	PDEase_I	e3ghqA1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PDEase_I	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Bacterioferritin	oxidoreductase activity catalytic activity molecular sequestering activity iron ion sequestering activity metal ion sequestering activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity cation binding ferric iron binding transition metal ion binding iron ion binding oxidoreductase activity catalytic activity molecular sequestering activity iron ion sequestering activity metal ion sequestering activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity cation binding ferric iron binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding tetrapyrrole binding heme binding oxidoreductase activity, acting on metal ions ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009040	Ferritin-like diiron domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002024	Bacterioferritin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008331	Ferritin/DPS domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.