Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Sigma70_r2,Sigma70_ner | e3goxB1 | A: alpha arrays | X: TIM beta/alpha-barrel | H: TIM barrels | T: TIM barrels | F: Sigma70_r2,Sigma70_ner | ECOD (v295) |
| A | SH3_17 | e3goxA1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: SH3_17 | ECOD (v295) |
| A | zf-C2H2_6 | e3goxA2 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: zf-C2H2_6 | ECOD (v295) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
| B | 3.30.60.130 | Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2) | domain 1 | CATH (4.3.0) |
| B | 3.40.1800.10 | Alpha Beta | 3-Layer(aba) Sandwich | His-Me finger endonuclease fold | His-Me finger endonucleases | CATH (4.3.0) |
| A | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
| A | 3.30.60.130 | Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2) | domain 1 | CATH (4.3.0) |
| A | 3.40.1800.10 | Alpha Beta | 3-Layer(aba) Sandwich | His-Me finger endonuclease fold | His-Me finger endonucleases | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| 5'-(*DTP*DAP*DCP*DGP*DTP*DCP*DGP*DAP*DGP*DTP*DC)-3' | - | - | - | |
| 5'-(*DCP*DTP*DCP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DA)-3' | - | - | - | |
| Restriction endonuclease Hpy99I | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR004211 | Recombination endonuclease VII | Family | |
| IPR038563 | Recombination endonuclease VII superfamily | Homologous Superfamily | |
| IPR041475 | His-Me finger endonuclease, beta4-alpha2 domain | Domain | |
| IPR044925 | His-Me finger superfamily | Homologous Superfamily | |
| IPR040625 | Restriction endonuclease, SH3 domain | Domain |
