3GRO

Human palmitoyl-protein thioesterase 1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3groa_	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	Thioesterases	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3grob_	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	Thioesterases	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Thioesterases	8081299	4000718	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	alpha/beta-Hydrolases	8081300	3000102	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	alpha/beta-Hydrolases	8081300	3000102	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Palm_thioest	e3groA1	A: a/b three-layered sandwiches	X: alpha/beta-Hydrolases (From Topology)	H: alpha/beta-Hydrolases (From Topology)	T: alpha/beta-Hydrolases	F: Palm_thioest	ECOD (1.6)
B	Palm_thioest	e3groB1	A: a/b three-layered sandwiches	X: alpha/beta-Hydrolases (From Topology)	H: alpha/beta-Hydrolases (From Topology)	T: alpha/beta-Hydrolases	F: Palm_thioest	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
B	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02089	Palmitoyl protein thioesterase (Palm_thioest)	Palmitoyl protein thioesterase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Palmitoyl-protein thioesterase 1	palmitoyl-(protein) hydrolase activity palmitoyl hydrolase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds thiolester hydrolase activity hydrolase activity catalytic activity binding ion binding anion binding phospholipid binding lipid binding lysophosphatidic acid binding carbohydrate derivative binding palmitoyl-(protein) hydrolase activity palmitoyl hydrolase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds thiolester hydrolase activity hydrolase activity catalytic activity binding ion binding anion binding phospholipid binding lipid binding lysophosphatidic acid binding carbohydrate derivative binding small molecule binding deacylase activity fatty acyl-CoA hydrolase activity long-chain fatty acyl-CoA hydrolase activity acyl-CoA hydrolase activity sulfatide binding glycolipid binding	biological regulation regulation of synapse structure or activity regulation of biological quality developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development adult locomotory behavior biological regulation regulation of synapse structure or activity regulation of biological quality developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development adult locomotory behavior behavior adult behavior locomotory behavior cellular response to stimulus positive regulation of response to biotic stimulus regulation of toll-like receptor 9 signaling pathway regulation of cellular process pattern recognition receptor signaling pathway response to stimulus negative regulation of biological process regulation of signal transduction response to biotic stimulus intracellular signal transduction cell communication immune response-activating signaling pathway positive regulation of immune response negative regulation of toll-like receptor 9 signaling pathway regulation of immune system process signal transduction positive regulation of immune system process innate immune response-activating signaling pathway regulation of biological process immune response response to other organism regulation of innate immune response response to external stimulus regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response toll-like receptor 9 signaling pathway activation of innate immune response regulation of immune response activation of immune response cytoplasmic pattern recognition receptor signaling pathway regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus intracellular receptor signaling pathway signaling negative regulation of signaling negative regulation of cytoplasmic pattern recognition receptor signaling pathway negative regulation of intracellular signal transduction positive regulation of biological process regulation of cytoplasmic pattern recognition receptor signaling pathway negative regulation of cell communication positive regulation of response to stimulus endolysosomal toll-like receptor signaling pathway positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of intracellular signal transduction regulation of response to stress response to stress innate immune response negative regulation of cellular process response to external biotic stimulus regulation of signaling positive regulation of innate immune response defense response negative regulation of response to stimulus defense response to symbiont negative regulation of signal transduction negative regulation of immune system process immune system process regulation of cell communication cellular process membrane organization cellular component organization membrane raft organization cellular component organization or biogenesis negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death trans-synaptic signaling cellular localization neurotransmitter secretion transport secretion cell-cell signaling export from cell neurotransmitter transport establishment of localization chemical synaptic transmission localization signal release from synapse synaptic signaling secretion by cell signal release anterograde trans-synaptic signaling establishment of localization in cell protein localization establishment of protein localization nitrogen compound transport protein transport cellular macromolecule localization macromolecule localization thioester biosynthetic process lipid biosynthetic process fatty-acyl-CoA biosynthetic process nucleobase-containing compound metabolic process acyl-CoA metabolic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process acyl-CoA biosynthetic process phosphate-containing compound metabolic process sulfur compound metabolic process small molecule metabolic process amide metabolic process thioester metabolic process fatty-acyl-CoA metabolic process phosphorus metabolic process nucleoside phosphate metabolic process fatty acid derivative biosynthetic process primary metabolic process amide biosynthetic process nucleobase-containing compound biosynthetic process fatty acid derivative metabolic process purine-containing compound metabolic process sulfur compound biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process metabolic process lipid metabolic process catabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process lipoprotein metabolic process macromolecule deacylation protein deacylation macromolecule modification macromolecule depalmitoylation protein depalmitoylation protein modification process lipoprotein catabolic process regulation of growth regulation of cellular component organization growth negative regulation of cell growth regulation of cell growth cell growth negative regulation of growth regulation of localization import into cell positive regulation of cellular component organization vesicle-mediated transport positive regulation of endocytosis positive regulation of cellular process regulation of endocytosis positive regulation of pinocytosis regulation of transport regulation of vesicle-mediated transport positive regulation of transport regulation of pinocytosis pinocytosis endocytosis neuron apoptotic process negative regulation of neuron apoptotic process regulation of neuron apoptotic process homeostatic process intracellular pH reduction regulation of intracellular pH lysosome organization vacuolar acidification lysosomal lumen acidification intracellular monoatomic cation homeostasis regulation of pH monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis regulation of lysosomal lumen pH regulation of cellular pH intracellular monoatomic ion homeostasis vacuole organization lytic vacuole organization organelle organization cellular homeostasis chemical homeostasis lipid catabolic process positive regulation of receptor-mediated endocytosis regulation of receptor-mediated endocytosis receptor-mediated endocytosis sphingolipid catabolic process membrane lipid metabolic process sphingolipid metabolic process membrane lipid catabolic process sensory perception of light stimulus system process sensory perception nervous system process visual perception learning learning or memory cognition associative learning grooming behavior cellular developmental process cell development generation of neurons neurogenesis neuron differentiation cell differentiation neuron development	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure lytic vacuole membrane-enclosed lumen vacuolar lumen vacuole intracellular membrane-bounded organelle lysosomal lumen intracellular organelle lumen intracellular organelle organelle lumen organelle cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure lytic vacuole membrane-enclosed lumen vacuolar lumen vacuole intracellular membrane-bounded organelle lysosomal lumen intracellular organelle lumen intracellular organelle organelle lumen organelle cytoplasm lysosome extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytosol cytosolic region presynapse presynaptic cytosol synapse cell junction membrane microdomain membrane raft somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection vacuolar membrane lytic vacuole membrane bounding membrane of organelle lysosomal membrane organelle membrane Golgi apparatus endomembrane system cell body neuronal cell body intracellular vesicle transport vesicle membrane cytoplasmic vesicle vesicle membrane synaptic vesicle synaptic vesicle membrane transport vesicle exocytic vesicle membrane cytoplasmic vesicle membrane secretory vesicle exocytic vesicle axon nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR002472	Palmitoyl protein thioesterase	Family
A, B	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P50897	neuronal ceroid lipofuscinosis neuronal ceroid lipofuscinosis 1 Ceroid Lipofuscinosis, Neuronal, 1 infantile neuronal ceroid lipofuscinosis plasma cell myeloma astrocytic tumor leukodystrophy neurodegenerative disease ovarian cancer tuberculosis breast cancer diabetes mellitus intellectual disability lymphoplasmacytic lymphoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia neuronal ceroid lipofuscinosis neuronal ceroid lipofuscinosis 1 Ceroid Lipofuscinosis, Neuronal, 1 infantile neuronal ceroid lipofuscinosis plasma cell myeloma astrocytic tumor leukodystrophy neurodegenerative disease ovarian cancer tuberculosis breast cancer diabetes mellitus intellectual disability lymphoplasmacytic lymphoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia ulcerative colitis Duchenne muscular dystrophy inborn errors of metabolism invasive ductal breast carcinoma lysosomal storage disease

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Monotopic/peripheral	Alpha/Beta monotopic/peripheral	Alpha/beta-hydrolases	Thioesterases

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.