3HG0
Crystal structure of a DARPin in complex with ORF49 from Lactococcal phage TP901-1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Virus attachment protein globular domain | 8040389 | 3001376 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Virus attachment protein globular domain | 8040389 | 3001376 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Virus attachment protein globular domain | 8040389 | 3001376 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Caudo_bapla_RBP_3rd | e3hg0A1 | A: beta sandwiches | X: Domain in virus attachment proteins (From Topology) | H: Domain in virus attachment proteins (From Topology) | T: Domain in virus attachment proteins | F: Caudo_bapla_RBP_3rd | ECOD (1.6) |
A | EUF07875 | e3hg0A2 | A: beta duplicates or obligate multimers | X: Phage tail fiber protein trimerization domain (From Topology) | H: Phage tail fiber protein trimerization domain (From Topology) | T: Phage tail fiber protein trimerization domain | F: EUF07875 | ECOD (1.6) |
B | Caudo_bapla_RBP_3rd | e3hg0B3 | A: beta sandwiches | X: Domain in virus attachment proteins (From Topology) | H: Domain in virus attachment proteins (From Topology) | T: Domain in virus attachment proteins | F: Caudo_bapla_RBP_3rd | ECOD (1.6) |
B | EUF07875 | e3hg0B2 | A: beta duplicates or obligate multimers | X: Phage tail fiber protein trimerization domain (From Topology) | H: Phage tail fiber protein trimerization domain (From Topology) | T: Phage tail fiber protein trimerization domain | F: EUF07875 | ECOD (1.6) |
C | Caudo_bapla_RBP_3rd | e3hg0C3 | A: beta sandwiches | X: Domain in virus attachment proteins (From Topology) | H: Domain in virus attachment proteins (From Topology) | T: Domain in virus attachment proteins | F: Caudo_bapla_RBP_3rd | ECOD (1.6) |
C | EUF07875 | e3hg0C2 | A: beta duplicates or obligate multimers | X: Phage tail fiber protein trimerization domain (From Topology) | H: Phage tail fiber protein trimerization domain (From Topology) | T: Phage tail fiber protein trimerization domain | F: EUF07875 | ECOD (1.6) |
D | Ank_2 | e3hg0D1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: Ank_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.1830 | Mainly Beta | Sandwich | Immunoglobulin-like | Phage tail base-plate Siphoviridae RBP, head domain | CATH (4.3.0) |
B | 2.60.40.1830 | Mainly Beta | Sandwich | Immunoglobulin-like | Phage tail base-plate Siphoviridae RBP, head domain | CATH (4.3.0) |
C | 2.60.40.1830 | Mainly Beta | Sandwich | Immunoglobulin-like | Phage tail base-plate Siphoviridae RBP, head domain | CATH (4.3.0) |
D | 1.25.40.20 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ankyrin repeat-containing domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18338 | Lower baseplate protein N-terminal domain (BppL_N) | Lower baseplate protein N-terminal domain | - | Repeat | |
PF08931 | Lactophage receptor-binding protein C-terminal head domain (Caudo_bapla_RBP) | Lactophage receptor-binding protein C-terminal head domain | Caudo_bapla_RBP is a family of proteins expressed from ORF18 of the Lactococcus P2-like phage. This is one of three protein domains, shoulders, neck, and head, that form the phage tail base-plate. In the overall structure this head domain exists as s ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Baseplate protein | - |
| ||
Designed Ankyrin Repeat Protein (DARPin) 20 | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008982 | Adenovirus pIV-like, attachment domain | Homologous Superfamily | |
IPR015027 | Receptor-binding protein of phage tail base-plate Siphoviridae, head | Domain | |
IPR040956 | Lower baseplate protein, N-terminal | Domain |