3HRZ | pdb_00003hrz

Cobra Venom Factor (CVF) in complex with human factor B

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Sushi/CCP/SCR domain	8043502	3000902	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Sushi/CCP/SCR domain	8043505	3000902	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	vWA-like	8042312	3000832	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Sushi/CCP/SCR domain	8043500	3000902	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Trypsin-like serine proteases	8042311	3000114	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	YonK	e3hrzD4	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: YonK	ECOD (v294.1)
D	HisKA	e3hrzD3	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: ClpP/crotonase	T: ClpP/crotonase	F: HisKA	ECOD (v294.1)
C	Ribosomal_S6e	e3hrzC1	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Ribosomal_S6e	ECOD (v294.1)
C	SBP_bac_5	e3hrzC3	A: a/b three-layered sandwiches	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: SBP_bac_5	ECOD (v294.1)
C	B12-binding	e3hrzC4	A: a/b three-layered sandwiches	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: B12-binding	ECOD (v294.1)
B	Glyco_hydro_35	e3hrzB1	A: a/b three-layered sandwiches	X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	F: Glyco_hydro_35	ECOD (v294.1)
B	LAP1_C	e3hrzB3	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: LAP1_C	ECOD (v294.1)
A	MG1	e3hrzA1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: MG1	ECOD (v294.1)
A	MatP	e3hrzA4	A: a/b three-layered sandwiches	X: C-terminal domain in some PLP-dependent transferases	H: C-terminal domain in some PLP-dependent transferases	T: C-terminal domain in some PLP-dependent transferases	F: MatP	ECOD (v294.1)
A	A2M_BRD	e3hrzA6	A: a/b three-layered sandwiches	X: DP domain	H: DP domain	T: DP domain	F: A2M_BRD	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.20.210.20	Mainly Beta	Single Sheet	ubp-family deubiquitinating enzyme fold		CATH (4.3.0)
C	2.60.40.690	Mainly Beta	Sandwich	Immunoglobulin-like	Alpha-macroglobulin, receptor-binding domain	CATH (4.3.0)
C	2.40.50.120	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
B	2.20.130.20	Mainly Beta	Single Sheet	S-adenosyl-L-methionine-dependent methyltransferases		CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	2.60.40.1930	Mainly Beta	Sandwich	Immunoglobulin-like	Macroglobulin (MG2) domain	CATH (4.3.0)
A	2.60.40.1940	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	6.20.50.160	Special	Other non-globular	N-terminal domain of TfIIb		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Source
D	PF00092	von Willebrand factor type A domain (VWA)	von Willebrand factor type A domain	Domain
D	PF00084	Sushi repeat (SCR repeat) (Sushi)	Sushi repeat (SCR repeat)	Domain
D	PF00089	Trypsin (Trypsin)	Trypsin	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D	Complement factor B	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity protein binding binding complement binding	biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to bacterium response to external stimulus response to external biotic stimulus response to biotic stimulus humoral immune response positive regulation of biological process complement activation, alternative pathway positive regulation of response to stimulus complement activation positive regulation of immune response response to stress biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to bacterium response to external stimulus response to external biotic stimulus response to biotic stimulus humoral immune response positive regulation of biological process complement activation, alternative pathway positive regulation of response to stimulus complement activation positive regulation of immune response response to stress innate immune response regulation of immune system process positive regulation of immune system process regulation of biological process immune response defense response biological regulation defense response to symbiont immune effector process regulation of response to stimulus immune system process defense response to other organism regulation of immune response activation of immune response proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure extracellular region extracellular space blood microparticle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle cell surface cell periphery plasma membrane cellular anatomical structure extracellular region extracellular space blood microparticle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle cell surface cell periphery plasma membrane membrane other organism part symbiont cell surface
C	Cobra venom factor	enzyme regulator activity molecular function inhibitor activity peptidase regulator activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity toxin activity cation binding ion binding binding metal ion binding small molecule binding	humoral immune response regulation of biological process response to stimulus immune response biological regulation positive regulation of biological process immune effector process positive regulation of response to stimulus complement activation positive regulation of immune response regulation of response to stimulus immune system process regulation of immune response regulation of immune system process humoral immune response regulation of biological process response to stimulus immune response biological regulation positive regulation of biological process immune effector process positive regulation of response to stimulus complement activation positive regulation of immune response regulation of response to stimulus immune system process regulation of immune response regulation of immune system process positive regulation of immune system process activation of immune response defense response response to stress inflammatory response	cellular anatomical structure extracellular region extracellular space
B	Cobra venom factor	enzyme regulator activity molecular function inhibitor activity peptidase regulator activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity toxin activity cation binding ion binding binding metal ion binding small molecule binding	humoral immune response regulation of biological process response to stimulus immune response biological regulation positive regulation of biological process immune effector process positive regulation of response to stimulus complement activation positive regulation of immune response regulation of response to stimulus immune system process regulation of immune response regulation of immune system process humoral immune response regulation of biological process response to stimulus immune response biological regulation positive regulation of biological process immune effector process positive regulation of response to stimulus complement activation positive regulation of immune response regulation of response to stimulus immune system process regulation of immune response regulation of immune system process positive regulation of immune system process activation of immune response defense response response to stress inflammatory response	cellular anatomical structure extracellular region extracellular space
A	Cobra venom factor	enzyme regulator activity molecular function inhibitor activity peptidase regulator activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity toxin activity cation binding ion binding binding metal ion binding small molecule binding	humoral immune response regulation of biological process response to stimulus immune response biological regulation positive regulation of biological process immune effector process positive regulation of response to stimulus complement activation positive regulation of immune response regulation of response to stimulus immune system process regulation of immune response regulation of immune system process humoral immune response regulation of biological process response to stimulus immune response biological regulation positive regulation of biological process immune effector process positive regulation of response to stimulus complement activation positive regulation of immune response regulation of response to stimulus immune system process regulation of immune response regulation of immune system process positive regulation of immune system process activation of immune response defense response response to stress inflammatory response	cellular anatomical structure extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D	IPR011360	Complement B/C2	Family
D	IPR028341	Complement factor B	Family
D	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
D	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
D	IPR001314	Peptidase S1A, chymotrypsin family	Family
D	IPR033116	Serine proteases, trypsin family, serine active site	Active Site
D	IPR001254	Serine proteases, trypsin domain	Domain
D	IPR002035	von Willebrand factor, type A	Domain
D	IPR000436	Sushi/SCR/CCP domain	Domain
D	IPR018114	Serine proteases, trypsin family, histidine active site	Active Site
D	IPR035976	Sushi/SCR/CCP superfamily	Homologous Superfamily
C	IPR019742	Alpha-2-macroglobulin, conserved site	Conserved Site
C	IPR009048	Alpha-macroglobulin, receptor-binding	Domain
C	IPR041555	Macroglobulin domain MG3	Domain
C	IPR049466	Complement component 3, CUB domain, first segment	Domain
C	IPR001599	Alpha-2-macroglobulin	Domain
C	IPR047565	Alpha-macroglobulin-like, thiol-ester bond-forming region	Conserved Site
C	IPR048848	Complement component 3, CUB domain, second segment	Domain
C	IPR018081	Anaphylatoxin, complement system	Homologous Superfamily
C	IPR035815	Complement C3-like, NTR domain	Domain
C	IPR018933	Netrin module, non-TIMP type	Domain
C	IPR001840	Anaphylatoxin, complement system domain	Domain
C	IPR041425	Complement C3/4/5, macroglobulin domain MG1	Domain
C	IPR011625	Alpha-2-macroglobulin, bait region domain	Domain
C	IPR001134	Netrin domain	Domain
C	IPR008993	Tissue inhibitor of metalloproteinases-like, OB-fold	Homologous Superfamily
C	IPR011626	Alpha-macroglobulin-like, TED domain	Domain
C	IPR000020	Anaphylatoxin/fibulin	Domain
C	IPR036595	Alpha-macroglobulin, receptor-binding domain superfamily	Homologous Superfamily
C	IPR002890	Macroglobulin domain	Domain
C	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
C	IPR050473	Alpha-2-macroglobulin/Complement system	Family
C	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
C	IPR040839	Macroglobulin domain MG4	Domain
B	IPR019742	Alpha-2-macroglobulin, conserved site	Conserved Site
B	IPR009048	Alpha-macroglobulin, receptor-binding	Domain
B	IPR041555	Macroglobulin domain MG3	Domain
B	IPR049466	Complement component 3, CUB domain, first segment	Domain
B	IPR001599	Alpha-2-macroglobulin	Domain
B	IPR047565	Alpha-macroglobulin-like, thiol-ester bond-forming region	Conserved Site
B	IPR048848	Complement component 3, CUB domain, second segment	Domain
B	IPR018081	Anaphylatoxin, complement system	Homologous Superfamily
B	IPR035815	Complement C3-like, NTR domain	Domain
B	IPR018933	Netrin module, non-TIMP type	Domain
B	IPR001840	Anaphylatoxin, complement system domain	Domain
B	IPR041425	Complement C3/4/5, macroglobulin domain MG1	Domain
B	IPR011625	Alpha-2-macroglobulin, bait region domain	Domain
B	IPR001134	Netrin domain	Domain
B	IPR008993	Tissue inhibitor of metalloproteinases-like, OB-fold	Homologous Superfamily
B	IPR011626	Alpha-macroglobulin-like, TED domain	Domain
B	IPR000020	Anaphylatoxin/fibulin	Domain
B	IPR036595	Alpha-macroglobulin, receptor-binding domain superfamily	Homologous Superfamily
B	IPR002890	Macroglobulin domain	Domain
B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B	IPR050473	Alpha-2-macroglobulin/Complement system	Family
B	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
B	IPR040839	Macroglobulin domain MG4	Domain
A	IPR019742	Alpha-2-macroglobulin, conserved site	Conserved Site
A	IPR009048	Alpha-macroglobulin, receptor-binding	Domain
A	IPR041555	Macroglobulin domain MG3	Domain
A	IPR049466	Complement component 3, CUB domain, first segment	Domain
A	IPR001599	Alpha-2-macroglobulin	Domain
A	IPR047565	Alpha-macroglobulin-like, thiol-ester bond-forming region	Conserved Site
A	IPR048848	Complement component 3, CUB domain, second segment	Domain
A	IPR018081	Anaphylatoxin, complement system	Homologous Superfamily
A	IPR035815	Complement C3-like, NTR domain	Domain
A	IPR018933	Netrin module, non-TIMP type	Domain
A	IPR001840	Anaphylatoxin, complement system domain	Domain
A	IPR041425	Complement C3/4/5, macroglobulin domain MG1	Domain
A	IPR011625	Alpha-2-macroglobulin, bait region domain	Domain
A	IPR001134	Netrin domain	Domain
A	IPR008993	Tissue inhibitor of metalloproteinases-like, OB-fold	Homologous Superfamily
A	IPR011626	Alpha-macroglobulin-like, TED domain	Domain
A	IPR000020	Anaphylatoxin/fibulin	Domain
A	IPR036595	Alpha-macroglobulin, receptor-binding domain superfamily	Homologous Superfamily
A	IPR002890	Macroglobulin domain	Domain
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR050473	Alpha-2-macroglobulin/Complement system	Family
A	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
A	IPR040839	Macroglobulin domain MG4	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D	Pharos: P00751	age-related macular degeneration complement factor b deficiency atypical hemolytic-uremic syndrome myasthenia gravis atypical hemolytic-uremic syndrome with B factor anomaly systemic lupus erythematosus ulcerative colitis hemolytic-uremic syndrome Libman-Sacks Disease macular degeneration membranous glomerulonephritis age related macular degeneration 14 ovarian cancer retinal degeneration wet macular degeneration age-related macular degeneration complement factor b deficiency atypical hemolytic-uremic syndrome myasthenia gravis atypical hemolytic-uremic syndrome with B factor anomaly systemic lupus erythematosus ulcerative colitis hemolytic-uremic syndrome Libman-Sacks Disease macular degeneration membranous glomerulonephritis age related macular degeneration 14 ovarian cancer retinal degeneration wet macular degeneration cervical cancer Hashimoto thyroiditis hypertensive disorder lung carcinoma neuromyelitis optica psoriasis skin basal cell carcinoma autism spectrum disorder brain injury heart disease non-alcoholic fatty liver disease psoriatic arthritis squamous cell lung carcinoma vitiligo endometriosis hemolytic anemia hepatitis B virus infection