Annotations: 3J34

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
PA [auth h]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
OA [auth g]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
NA [auth f]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
MA [auth e]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
LA [auth d]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
KA [auth 7]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
JA [auth m]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
IA [auth l]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
HA [auth k]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
GA [auth j]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
FA [auth i]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
EA [auth 6]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
DA [auth c]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
CA [auth b]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
BA [auth a]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
AA [auth 5]	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Retrovirus capsid protein, N-terminal core domain	8036123	3000745	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	Peptidase_M10	e3j34Z1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
Y	Peptidase_M10	e3j34Y1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
X	Peptidase_M10	e3j34X1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
W	Peptidase_M10	e3j34W1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
V	Peptidase_M10	e3j34V1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
U	Peptidase_M10	e3j34U1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
T	Peptidase_M10	e3j34T1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
S	Peptidase_M10	e3j34S1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
R	Peptidase_M10	e3j34R1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
Q	Peptidase_M10	e3j34Q1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
PA [auth h]	Peptidase_M10	e3j34h1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
P	Peptidase_M10	e3j34P1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
OA [auth g]	Peptidase_M10	e3j34g1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
O	Peptidase_M10	e3j34O1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
NA [auth f]	Fer4_13	e3j34f3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Fer4_13	ECOD (develop294)
N	Peptidase_M10	e3j34N1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
MA [auth e]	Fer4_13	e3j34e3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Fer4_13	ECOD (develop294)
M	Peptidase_M10	e3j34M1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
LA [auth d]	Peptidase_M10	e3j34d1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
L	Peptidase_M10	e3j34L1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
KA [auth 7]	Peptidase_M10	e3j3471	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
K	Peptidase_M10	e3j34K1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
JA [auth m]	Peptidase_M10	e3j34m1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
J	Peptidase_M10	e3j34J1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
IA [auth l]	Peptidase_M10	e3j34l1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
I	Peptidase_M10	e3j34I1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
HA [auth k]	Peptidase_M10	e3j34k1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
H	Peptidase_M10	e3j34H1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
GA [auth j]	Peptidase_M10	e3j34j1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
G	Peptidase_M10	e3j34G1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
FA [auth i]	Fer4_13	e3j34i3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Fer4_13	ECOD (develop294)
F	Peptidase_M10	e3j34F1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
EA [auth 6]	Peptidase_M10	e3j3461	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
E	Fer4_13	e3j34E3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Fer4_13	ECOD (develop294)
DA [auth c]	Peptidase_M10	e3j34c1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
D	Peptidase_M10	e3j34D1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
CA [auth b]	Peptidase_M10	e3j34b1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
C	Peptidase_M10	e3j34C1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
BA [auth a]	Peptidase_M10	e3j34a1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
B	Peptidase_M10	e3j34B1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
AA [auth 5]	Peptidase_M10	e3j3451	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)
A	Peptidase_M10	e3j34A1	A: alpha bundles	X: all-alpha NTP pyrophosphatases	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: Peptidase_M10	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth 5], B, BA [auth a], C, A, AA [auth 5], B, BA [auth a], C, CA [auth b], D, DA [auth c], E, EA [auth 6], F, FA [auth i], G, GA [auth j], H, HA [auth k], I, IA [auth l], J, JA [auth m], K, KA [auth 7], L, LA [auth d], M, MA [auth e], N, NA [auth f], O, OA [auth g], P, PA [auth h], Q, R, S, T, U, V, W, X, Y, Z	capsid protein	structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding RNA binding nucleic acid binding identical protein binding protein binding	viral gene expression viral process viral translational frameshifting viral translation virion assembly viral budding viral budding via host ESCRT complex viral life cycle	host intracellular membrane-bounded organelle host cellular component host intracellular part host multivesicular body other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell late endosome host cell endosome host intracellular region virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host multivesicular body other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell late endosome host cell endosome host intracellular region virion component virion membrane host cell nucleus host cell plasma membrane host cell membrane viral nucleocapsid viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth 5], B, BA [auth a], C, A, AA [auth 5], B, BA [auth a], C, CA [auth b], D, DA [auth c], E, EA [auth 6], F, FA [auth i], G, GA [auth j], H, HA [auth k], I, IA [auth l], J, JA [auth m], K, KA [auth 7], L, LA [auth d], M, MA [auth e], N, NA [auth f], O, OA [auth g], P, PA [auth h], Q, R, S, T, U, V, W, X, Y, Z	IPR000071	Immunodeficiency lentiviral matrix, N-terminal	Domain
A, AA [auth 5], B, BA [auth a], C, A, AA [auth 5], B, BA [auth a], C, CA [auth b], D, DA [auth c], E, EA [auth 6], F, FA [auth i], G, GA [auth j], H, HA [auth k], I, IA [auth l], J, JA [auth m], K, KA [auth 7], L, LA [auth d], M, MA [auth e], N, NA [auth f], O, OA [auth g], P, PA [auth h], Q, R, S, T, U, V, W, X, Y, Z	IPR045345	Retroviral nucleocapsid Gag protein p24, C-terminal domain	Domain
A, AA [auth 5], B, BA [auth a], C, A, AA [auth 5], B, BA [auth a], C, CA [auth b], D, DA [auth c], E, EA [auth 6], F, FA [auth i], G, GA [auth j], H, HA [auth k], I, IA [auth l], J, JA [auth m], K, KA [auth 7], L, LA [auth d], M, MA [auth e], N, NA [auth f], O, OA [auth g], P, PA [auth h], Q, R, S, T, U, V, W, X, Y, Z	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
A, AA [auth 5], B, BA [auth a], C, A, AA [auth 5], B, BA [auth a], C, CA [auth b], D, DA [auth c], E, EA [auth 6], F, FA [auth i], G, GA [auth j], H, HA [auth k], I, IA [auth l], J, JA [auth m], K, KA [auth 7], L, LA [auth d], M, MA [auth e], N, NA [auth f], O, OA [auth g], P, PA [auth h], Q, R, S, T, U, V, W, X, Y, Z	IPR050195	Primate lentivirus group Gag polyprotein-like	Domain
A, AA [auth 5], B, BA [auth a], C, A, AA [auth 5], B, BA [auth a], C, CA [auth b], D, DA [auth c], E, EA [auth 6], F, FA [auth i], G, GA [auth j], H, HA [auth k], I, IA [auth l], J, JA [auth m], K, KA [auth 7], L, LA [auth d], M, MA [auth e], N, NA [auth f], O, OA [auth g], P, PA [auth h], Q, R, S, T, U, V, W, X, Y, Z	IPR001878	Zinc finger, CCHC-type	Domain
A, AA [auth 5], B, BA [auth a], C, A, AA [auth 5], B, BA [auth a], C, CA [auth b], D, DA [auth c], E, EA [auth 6], F, FA [auth i], G, GA [auth j], H, HA [auth k], I, IA [auth l], J, JA [auth m], K, KA [auth 7], L, LA [auth d], M, MA [auth e], N, NA [auth f], O, OA [auth g], P, PA [auth h], Q, R, S, T, U, V, W, X, Y, Z	IPR008919	Retrovirus capsid, N-terminal	Homologous Superfamily
A, AA [auth 5], B, BA [auth a], C, A, AA [auth 5], B, BA [auth a], C, CA [auth b], D, DA [auth c], E, EA [auth 6], F, FA [auth i], G, GA [auth j], H, HA [auth k], I, IA [auth l], J, JA [auth m], K, KA [auth 7], L, LA [auth d], M, MA [auth e], N, NA [auth f], O, OA [auth g], P, PA [auth h], Q, R, S, T, U, V, W, X, Y, Z	IPR010999	Retroviral matrix protein	Homologous Superfamily
A, AA [auth 5], B, BA [auth a], C, A, AA [auth 5], B, BA [auth a], C, CA [auth b], D, DA [auth c], E, EA [auth 6], F, FA [auth i], G, GA [auth j], H, HA [auth k], I, IA [auth l], J, JA [auth m], K, KA [auth 7], L, LA [auth d], M, MA [auth e], N, NA [auth f], O, OA [auth g], P, PA [auth h], Q, R, S, T, U, V, W, X, Y, Z	IPR012344	Matrix protein, lentiviral and alpha-retroviral, N-terminal	Homologous Superfamily
A, AA [auth 5], B, BA [auth a], C, A, AA [auth 5], B, BA [auth a], C, CA [auth b], D, DA [auth c], E, EA [auth 6], F, FA [auth i], G, GA [auth j], H, HA [auth k], I, IA [auth l], J, JA [auth m], K, KA [auth 7], L, LA [auth d], M, MA [auth e], N, NA [auth f], O, OA [auth g], P, PA [auth h], Q, R, S, T, U, V, W, X, Y, Z	IPR014817	Gag protein p6	Domain
A, AA [auth 5], B, BA [auth a], C, A, AA [auth 5], B, BA [auth a], C, CA [auth b], D, DA [auth c], E, EA [auth 6], F, FA [auth i], G, GA [auth j], H, HA [auth k], I, IA [auth l], J, JA [auth m], K, KA [auth 7], L, LA [auth d], M, MA [auth e], N, NA [auth f], O, OA [auth g], P, PA [auth h], Q, R, S, T, U, V, W, X, Y, Z	IPR008916	Retrovirus capsid, C-terminal	Homologous Superfamily