3J8H

Structure of the rabbit ryanodine receptor RyR1 in complex with FKBP12 at 3.8 Angstrom resolution


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRotamase-like 8098876 3000622 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRotamase-like 8098876 3000622 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRotamase-like 8098876 3000622 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRotamase-like 8098876 3000622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASPRYe3j8hA3 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: SPRYECOD (1.6)
AIns145_P3_rece3j8hA1 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Ins145_P3_recECOD (1.6)
AMIRe3j8hA2 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: MIRECOD (1.6)
AEF-hand_8e3j8hA8 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_8ECOD (1.6)
ARyRe3j8hA6 A: alpha duplicates or obligate multimersX: RyR motifs (From Topology)H: RyR motifs (From Topology)T: RyR motifsF: RyRECOD (1.6)
ARIH_assoce3j8hA13 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RIH_assocECOD (1.6)
AKOG2243e3j8hA11 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2243ECOD (1.6)
ARYDR_ITPR_1e3j8hA10 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPR_1ECOD (1.6)
ARYDR_ITPRe3j8hA12 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPRECOD (1.6)
ARR_TM4-6e3j8hA9 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: RR_TM4-6ECOD (1.6)
CSPRYe3j8hC12 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: SPRYECOD (1.6)
CIns145_P3_rece3j8hC11 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Ins145_P3_recECOD (1.6)
CMIRe3j8hC10 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: MIRECOD (1.6)
CEF-hand_8e3j8hC13 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_8ECOD (1.6)
CRyRe3j8hC9 A: alpha duplicates or obligate multimersX: RyR motifs (From Topology)H: RyR motifs (From Topology)T: RyR motifsF: RyRECOD (1.6)
CRIH_assoce3j8hC3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RIH_assocECOD (1.6)
CKOG2243e3j8hC5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2243ECOD (1.6)
CRYDR_ITPR_1e3j8hC6 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPR_1ECOD (1.6)
CRYDR_ITPRe3j8hC2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPRECOD (1.6)
CRR_TM4-6e3j8hC1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: RR_TM4-6ECOD (1.6)
ESPRYe3j8hE9 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: SPRYECOD (1.6)
EIns145_P3_rece3j8hE11 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Ins145_P3_recECOD (1.6)
EMIRe3j8hE10 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: MIRECOD (1.6)
EEF-hand_8e3j8hE13 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_8ECOD (1.6)
ERyRe3j8hE8 A: alpha duplicates or obligate multimersX: RyR motifs (From Topology)H: RyR motifs (From Topology)T: RyR motifsF: RyRECOD (1.6)
ERIH_assoce3j8hE3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RIH_assocECOD (1.6)
EKOG2243e3j8hE6 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2243ECOD (1.6)
ERYDR_ITPR_1e3j8hE5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPR_1ECOD (1.6)
ERYDR_ITPRe3j8hE2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPRECOD (1.6)
ERR_TM4-6e3j8hE1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: RR_TM4-6ECOD (1.6)
GSPRYe3j8hG9 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: SPRYECOD (1.6)
GIns145_P3_rece3j8hG11 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Ins145_P3_recECOD (1.6)
GMIRe3j8hG10 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: MIRECOD (1.6)
GEF-hand_8e3j8hG13 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_8ECOD (1.6)
GRyRe3j8hG8 A: alpha duplicates or obligate multimersX: RyR motifs (From Topology)H: RyR motifs (From Topology)T: RyR motifsF: RyRECOD (1.6)
GRIH_assoce3j8hG3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RIH_assocECOD (1.6)
GKOG2243e3j8hG6 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2243ECOD (1.6)
GRYDR_ITPR_1e3j8hG5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPR_1ECOD (1.6)
GRYDR_ITPRe3j8hG2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPRECOD (1.6)
GRR_TM4-6e3j8hG1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: RR_TM4-6ECOD (1.6)
BFKBP_Ce3j8hB1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: FKBP_CECOD (1.6)
DFKBP_Ce3j8hD1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: FKBP_CECOD (1.6)
FFKBP_Ce3j8hF1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: FKBP_CECOD (1.6)
HFKBP_Ce3j8hH1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: FKBP_CECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E, G
PF00622SPRY domain (SPRY)SPRY domainSPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of ...Domain
A, C, E, G
PF02815MIR domain (MIR)MIR domainThe MIR (protein mannosyltransferase, IP3R and RyR) domain is a domain that may have a ligand transferase function [1]. Domain
A, C, E, G
PF21119Ryanodine receptor junctional solenoid repeat (RYDR_Jsol)Ryanodine receptor junctional solenoid repeat- Repeat
A, C, E, G
PF01365RIH domain (RYDR_ITPR)RIH domain- Repeat
A, C, E, G
PF02026RyR domain (RyR)RyR domain- Family
B, D, F, H
PF00254FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)FKBP-type peptidyl-prolyl cis-trans isomeraseDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, G
Ryanodine receptor 1
B, D, F, H
Peptidyl-prolyl cis-trans isomerase FKBP1A

InterPro: Protein Family Classification InterPro Database Homepage

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D, E
OPMTransmembraneAlpha-helical polytopicIon channel (VIC) superfamilyRyanodine receptor