Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
PCamSe3l4gP13 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: CamSECOD (develop294)
NCamSe3l4gN13 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: CamSECOD (develop294)
LCamSe3l4gL13 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: CamSECOD (develop294)
JCamSe3l4gJ13 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: CamSECOD (develop294)
HCamSe3l4gH13 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: CamSECOD (develop294)
FCamSe3l4gF13 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: CamSECOD (develop294)
DCamSe3l4gD13 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: CamSECOD (develop294)
BtRNA_synthFbetae3l4gB10 A: alpha bundlesX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: tRNA_synthFbetaECOD (develop294)
BRimKe3l4gB12 A: alpha bundlesX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: RimKECOD (develop294)
BMHC_II_betae3l4gB2 A: alpha bundlesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: MHC_II_betaECOD (develop294)
OGlyco_hydro_35e3l4gO1 A: alpha bundlesX: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunitH: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunitT: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunitF: Glyco_hydro_35ECOD (develop294)
MMG1e3l4gM1 A: alpha bundlesX: Alpha-beta plaitsH: Pseudouridine synthaseT: Pseudouridine synthaseF: MG1ECOD (develop294)
KCBSe3l4gK1 A: alpha bundlesX: Thioredoxin-likeH: ClpP/crotonaseT: ClpP/crotonaseF: CBSECOD (develop294)
Ke3l4gK2 A: alpha bundlesX: Lipocalins/StreptavidinH: RIFT-relatedT: acid proteaseF:ECOD (develop294)
IMG1e3l4gI1 A: alpha bundlesX: Alpha-beta plaitsH: Pseudouridine synthaseT: Pseudouridine synthaseF: MG1ECOD (develop294)
GGlyco_hydro_35e3l4gG1 A: alpha bundlesX: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunitH: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunitT: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunitF: Glyco_hydro_35ECOD (develop294)
EGlyco_hydro_35e3l4gE1 A: alpha bundlesX: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunitH: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunitT: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunitF: Glyco_hydro_35ECOD (develop294)
CPheRS_DBD1e3l4gC1 A: alpha bundlesX: SSHS domainH: SSHS domain in type II DNA topoisomeraseT: SSHS domain in type II DNA topoisomeraseF: PheRS_DBD1ECOD (develop294)
CPheRS_DBD2e3l4gC2 A: alpha bundlesX: SSHS domainH: SSHS domain in type II DNA topoisomeraseT: SSHS domain in type II DNA topoisomeraseF: PheRS_DBD2ECOD (develop294)
CtRNA-synt_2de3l4gC3 A: alpha bundlesX: SSHS domainH: SSHS domain in type II DNA topoisomeraseT: SSHS domain in type II DNA topoisomeraseF: tRNA-synt_2dECOD (develop294)
ARibosomal_L13ee3l4gA3 A: alpha bundlesX: Alpha-beta plaitsH: Pseudouridine synthaseT: Pseudouridine synthaseF: Ribosomal_L13eECOD (develop294)
AUshere3l4gA1 A: alpha bundlesX: Inserted helical domain in fatty acid synthase subunit betaH: Voltage-gated ion channelsT: Voltage-gated ion channelsF: UsherECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
P3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
P3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
P3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
N3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
N3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
N3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
L3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
L3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
L3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
J3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
J3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
J3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
H3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
H3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
H3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
F3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
F3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
F3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
D3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
D3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
D3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
B3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
B3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
B3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
O3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
M3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
K3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
I3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
G3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
E3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
C3.30.1370.240 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1CATH (4.3.0)
C1.10.10.2320 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
C1.10.10.2330 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
C3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
A3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D, F, H, J
PF18262Phe-tRNA synthetase beta subunit B1 domain (PhetRS_B1)Phe-tRNA synthetase beta subunit B1 domainThis is the N-terminal domain found in human cytosolic phenylalanyl tRNA synthetase beta subunit [1]. Domain
B, D, F, H, J
PF03483B3/4 domain (B3_4)B3/4 domainThis domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins. Domain
B, D, F, H, J
PF03484tRNA synthetase B5 domain (B5)tRNA synthetase B5 domainThis domain is found in phenylalanine-tRNA synthetase beta subunits. Domain
B, D, F, H, J
PF17759Phenylalanyl tRNA synthetase beta chain CLM domain (tRNA_synthFbeta)Phenylalanyl tRNA synthetase beta chain CLM domainThis domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase [1]. Domain
A, C, E, G, I
PF18553PheRS DNA binding domain 3 (PheRS_DBD3)PheRS DNA binding domain 3This is a DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase N-terminal region. This domain belongs to a superfamily of 'winged helix' DNA-biding domains. The topology of DBD-1 and DBD-3 closely resembles the topology of the Z-DNA-binding ...This is a DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase N-terminal region. This domain belongs to a superfamily of 'winged helix' DNA-biding domains. The topology of DBD-1 and DBD-3 closely resembles the topology of the Z-DNA-binding domain Zalpha of double-stranded RNA (dsRNA) adenosine deaminase and other domains from DNA-binding proteins. Mutational analysis indicate that DBD-1, 2 and 3 play critical roles in tRNAPhe binding and recognition, i.e., from the drastic reduction of aminoacylation activity seen upon removal of the N-terminal domains [1].
Domain
A, C, E, G, I
PF18554PheRS DNA binding domain 2 (PheRS_DBD2)PheRS DNA binding domain 2This is a DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase N-terminal region. Mutational analysis indicate that DBD-1, 2 and 3 play critical roles in tRNA- Phe binding and recognition, i.e., from the drastic reduction of aminoacylation a ...This is a DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase N-terminal region. Mutational analysis indicate that DBD-1, 2 and 3 play critical roles in tRNA- Phe binding and recognition, i.e., from the drastic reduction of aminoacylation activity seen upon removal of the N-terminal domains. DBD-2 and DBD-3 constitute large insertions sequentially included between two neighboring antiparallel strands of the DBD-1 domain. Moreover, the DBD-3 Pfam:PF18553 is the domain insertion into DBD-2 [1].
Domain
A, C, E, G, I
PF01409tRNA synthetases class II core domain (F) (tRNA-synt_2d)tRNA synthetases class II core domain (F)Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain. Domain
A, C, E, G, I
PF18552PheRS DNA binding domain 1 (PheRS_DBD1)PheRS DNA binding domain 1This is a DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase (EC:6.1.1.20) N-terminal region. This domain belongs to a superfamily of 'winged helix' DNA-biding domains. The topology of DBD-1 and DBD-3 closely resembles the topology of the ...This is a DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase (EC:6.1.1.20) N-terminal region. This domain belongs to a superfamily of 'winged helix' DNA-biding domains. The topology of DBD-1 and DBD-3 closely resembles the topology of the Z-DNA-binding domain Zalpha of double-stranded RNA (dsRNA) adenosine deaminase and other domains from DNA-binding proteins. Mutational analysis indicate that DBD-1, 2 and 3 play critical roles in tRNA-Phe binding and recognition, i.e., from the drastic reduction of aminoacylation activity seen upon removal of the N-terminal domains [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D, F, H, J
Phenylalanyl-tRNA synthetase beta chain
A, C, E, G, I
Phenylalanyl-tRNA synthetase alpha chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, D, F, H, J
IPR009061Putative DNA-binding domain superfamilyHomologous Superfamily
B, D, F, H, J
IPR045060Phenylalanine-tRNA ligase, class IIc, beta subunitFamily
B, D, F, H, J
IPR020825Phenylalanyl-tRNA synthetase-like, B3/B4Homologous Superfamily
B, D, F, H, J
IPR045864Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Homologous Superfamily
B, D, F, H, J
IPR004531Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archaeal/eukaryotic typeFamily
B, D, F, H, J
IPR005147tRNA synthetase, B5-domainDomain
B, D, F, H, J
IPR005146B3/B4 tRNA-binding domainDomain
B, D, F, H, J
IPR041616Phenylalanyl tRNA synthetase beta chain, core domainDomain
B, D, F, H, J
IPR040659Phenylalanine--tRNA ligase beta subunit, B1 domainDomain
A, C, E, G, I
IPR040586PheRS DNA binding domain 2Domain
A, C, E, G, I
IPR045864Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Homologous Superfamily
A, C, E, G, I
IPR002319Phenylalanyl-tRNA synthetaseDomain
A, C, E, G, I
IPR040724PheRS, DNA binding domain 1Domain
A, C, E, G, I
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
A, C, E, G, I
IPR004529Phenylalanyl-tRNA synthetase, class IIc, alpha subunitFamily
A, C, E, G, I
IPR006195Aminoacyl-tRNA synthetase, class IIDomain
A, C, E, G, I
IPR040725PheRS, DNA binding domain 3Domain