Annotations: 3LW5

Improved model of plant photosystem I

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2 Family	Photosystem I subunit PsaD	8074481	4003498	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Photosystem I subunit PsaD	8074482	3000951	SCOP2 (2022-06-29)
J	SCOP2 Family	Subunit IX of photosystem I reaction centre, PsaJ	8074517	4002101	SCOP2 (2022-06-29)
J	SCOP2 Superfamily	Subunit IX of photosystem I reaction centre, PsaJ	8074518	3000824	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Sdh_cyt	e3lw5F1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Sdh_cyt	ECOD (v295.2)
L	PsaL	e3lw5L1	A: alpha arrays	X: Retrovirus capsid protein	H: Ubiquitin-related	T: Ubiquitin-like	F: PsaL	ECOD (v295.2)
I	Sdh_cyt	e3lw5I1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Sdh_cyt	ECOD (v295.2)
H	Prim-Pol	e3lw5H1	A: alpha arrays	X: Cystine-knot cytokines	H: Lipoprotein localization factors LolAB	T: Lipoprotein localization factors LolAB	F: Prim-Pol	ECOD (v295.2)
G	Sdh_cyt	e3lw5G1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Sdh_cyt	ECOD (v295.2)
E	PapD_N	e3lw5E1	A: alpha arrays	X: Retrovirus capsid protein	H: Ubiquitin-related	T: Ubiquitin-like	F: PapD_N	ECOD (v295.2)
D	Sdh_cyt	e3lw5D1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Sdh_cyt	ECOD (v295.2)
C	Sdh_cyt	e3lw5C1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Sdh_cyt	ECOD (v295.2)
B	Pkinase, Kdo	e3lw5B1	A: alpha arrays	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Pkinase, Kdo	ECOD (v295.2)
R [auth 4]	Sdh_cyt	e3lw541	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Sdh_cyt	ECOD (v295.2)
Q [auth 3]	Cellulase	e3lw531	A: alpha arrays	X: Globin-like	H: Globin-like	T: Globin-like	F: Cellulase	ECOD (v295.2)
P [auth 2]	Sdh_cyt	e3lw521	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Sdh_cyt	ECOD (v295.2)
O [auth 1]	Sdh_cyt	e3lw511	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Sdh_cyt	ECOD (v295.2)
M [auth N]	Sdh_cyt	e3lw5N1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Sdh_cyt	ECOD (v295.2)
K	Cellulase	e3lw5K1	A: alpha arrays	X: Globin-like	H: Globin-like	T: Globin-like	F: Cellulase	ECOD (v295.2)
J	PapD_N	e3lw5J1	A: alpha arrays	X: Retrovirus capsid protein	H: Ubiquitin-related	T: Ubiquitin-like	F: PapD_N	ECOD (v295.2)
A	Pkinase, Kdo	e3lw5A1	A: alpha arrays	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Pkinase, Kdo	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.10.8.110	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
L	1.20.1240.10	Mainly Alpha	Up-down Bundle	Photosystem 1 Reaction Centre Subunit Xi	Chain: L	CATH (4.3.0)
G	1.10.286.40	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I	Chain A, domain 1	CATH (4.3.0)
E	2.30.30.50	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
D	3.30.1470.10	Alpha Beta	2-Layer Sandwich	Photosystem 1 Reaction Centre Subunit Ii	Chain: D	CATH (4.3.0)
C	3.30.70.20	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
B	1.20.1130.10	Mainly Alpha	Up-down Bundle	Photosystem I p700 chlorophyll A apoprotein A1	Photosystem I PsaA/PsaB	CATH (4.3.0)
M [auth N]	4.10.1190.10	Few Secondary Structures	Irregular	Chlorophyll A-B binding protein fold	Chlorophyll A-B binding protein	CATH (4.3.0)
K	1.10.286.40	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I	Chain A, domain 1	CATH (4.3.0)
J	1.20.5.510	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Single helix bin	CATH (4.3.0)
A	1.20.1130.10	Mainly Alpha	Up-down Bundle	Photosystem I p700 chlorophyll A apoprotein A1	Photosystem I PsaA/PsaB	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F	Photosystem I reaction center subunit III, chloroplastic	-	-	-
L	Putative uncharacterized protein	-	-	-
I	Photosystem I reaction center subunit VIII	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
H	Putative uncharacterized protein	-	-	-
G	Putative uncharacterized protein	-	-	-
E	Putative uncharacterized protein	-	-	-
D	Putative uncharacterized protein	-	-	-
C	Photosystem I iron-sulfur center	iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding electron transfer activity	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain metabolic process cellular process generation of precursor metabolites and energy photosynthetic electron transport in photosystem I	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
B	Photosystem I P700 chlorophyll a apoprotein A2	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding electron transfer activity	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
R [auth 4]	Chlorophyll a-b binding protein P4, chloroplastic	-	photosynthesis, light harvesting in photosystem I photosynthesis photosynthesis, light reaction photosynthesis, light harvesting metabolic process cellular process generation of precursor metabolites and energy	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane
Q [auth 3]	Chlorophyll a-b binding protein 3, chloroplastic	-	photosynthesis photosynthesis, light reaction photosynthesis, light harvesting metabolic process cellular process generation of precursor metabolites and energy	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane
P [auth 2]	Type II chlorophyll a/b binding protein from photosystem I	-	photosynthesis, light harvesting in photosystem I photosynthesis photosynthesis, light reaction photosynthesis, light harvesting metabolic process cellular process generation of precursor metabolites and energy	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane
O [auth 1]	AT3g54890	-	-	-
N [auth R]	CHAIN R	-	-	-
M [auth N]	Photosystem I-N subunit	-	-	-
K	Photosystem I reaction center subunit X psaK	-	-	-
J	Photosystem I reaction center subunit IX	-	-	-
A	Photosystem I P700 chlorophyll a apoprotein A1	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding electron transfer activity	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I	IPR036357	Photosystem I reaction centre subunit VIII superfamily	Homologous Superfamily
I	IPR001302	Photosystem I reaction centre subunit VIII	Family
C	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
C	IPR050157	Photosystem I iron-sulfur center	Family
C	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
C	IPR017491	Photosystem I protein PsaC	Family
B	IPR036408	Photosystem I PsaA/PsaB superfamily	Homologous Superfamily
B	IPR001280	Photosystem I PsaA/PsaB	Family
B	IPR006244	Photosystem I PsaB	Family
B	IPR020586	Photosystem I PsaA/PsaB, conserved site	Conserved Site
R [auth 4]	IPR001344	Chlorophyll A-B binding protein, plant and chromista	Family
R [auth 4]	IPR022796	Chlorophyll A-B binding protein	Family
Q [auth 3]	IPR001344	Chlorophyll A-B binding protein, plant and chromista	Family
Q [auth 3]	IPR022796	Chlorophyll A-B binding protein	Family
P [auth 2]	IPR001344	Chlorophyll A-B binding protein, plant and chromista	Family
P [auth 2]	IPR022796	Chlorophyll A-B binding protein	Family
A	IPR006243	Photosystem I PsaA	Family
A	IPR036408	Photosystem I PsaA/PsaB superfamily	Homologous Superfamily
A	IPR001280	Photosystem I PsaA/PsaB	Family
A	IPR020586	Photosystem I PsaA/PsaB, conserved site	Conserved Site