3MBO | pdb_00003mbo

Crystal Structure of the Glycosyltransferase BaBshA bound with UDP and L-malate

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DctP	e3mboA1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: DctP	ECOD (develop294)
A	LysR_substrate	e3mboA2	A: alpha bundles	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: LysR_substrate	ECOD (develop294)
B	Gtf3_C	e3mboB1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Gtf3_C	ECOD (develop294)
C	Aldedh	e3mboC1	A: alpha bundles	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (develop294)
C	LysR_substrate	e3mboC2	A: alpha bundles	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: LysR_substrate	ECOD (develop294)
G	MMS1_N	e3mboG1	A: alpha bundles	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: MMS1_N	ECOD (develop294)
G	LysR_substrate	e3mboG2	A: alpha bundles	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: LysR_substrate	ECOD (develop294)
H	MMS1_N	e3mboH1	A: alpha bundles	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: MMS1_N	ECOD (develop294)
H	LysR_substrate	e3mboH2	A: alpha bundles	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: LysR_substrate	ECOD (develop294)
F	Fer4, Fer4_7, Fer4_10	e3mboF1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: Aha1/BPI domain-like	F: Fer4, Fer4_7, Fer4_10	ECOD (develop294)
F	LysR_substrate	e3mboF2	A: alpha bundles	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: LysR_substrate	ECOD (develop294)
E	KAsynt_C_assoc	e3mboE1	A: alpha bundles	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: KAsynt_C_assoc	ECOD (develop294)
E	LysR_substrate	e3mboE2	A: alpha bundles	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: LysR_substrate	ECOD (develop294)
D		e3mboD1	A: alpha bundles	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F:	ECOD (develop294)
D	LysR_substrate	e3mboD2	A: alpha bundles	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: LysR_substrate	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)
B	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)
C	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)
G	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)
H	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)
F	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)
E	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)
D	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00534	Glycosyl transferases group 1 (Glycos_transf_1)	Glycosyl transferases group 1	Mutations in this domain of Swiss:P37287 lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members o ...	Mutations in this domain of Swiss:P37287 lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF13439	Glycosyltransferase Family 4 (Glyco_transf_4)	Glycosyltransferase Family 4		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Glycosyltransferase, group 1 family	glycosyltransferase activity transferase activity catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	carbohydrate derivative biosynthetic process glycosyl compound biosynthetic process small molecule biosynthetic process oxoacid metabolic process glycoside metabolic process carboxylic acid metabolic process carbohydrate derivative metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process bacillithiol biosynthetic process glycoside biosynthetic process sulfur compound biosynthetic process biosynthetic process carbohydrate derivative biosynthetic process glycosyl compound biosynthetic process small molecule biosynthetic process oxoacid metabolic process glycoside metabolic process carboxylic acid metabolic process carbohydrate derivative metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process bacillithiol biosynthetic process glycoside biosynthetic process sulfur compound biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process sulfur compound metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR050194	Glycosyltransferase group 1	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR028098	Glycosyltransferase subfamily 4-like, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR023881	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001296	Glycosyl transferase, family 1	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.