Crystal structure of the 1E9 PheL89Ser/LeuH47Trp/MetH100bPhe Fab in complex with a 39A11 transition state analog
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth L] | d3o2wl1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Mus musculus ) [TaxId: 10090 ], (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| A [auth L] | d3o2wl2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Mus musculus ) [TaxId: 10090 ], (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth L] | zf-rbx1 | e3o2wL1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: zf-rbx1 | ECOD (v294.2) |
| B [auth H] | zf-rbx1 | e3o2wH1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: zf-rbx1 | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| A [auth L] | 1E9, VL F105>S, VH L52>W, M115>F Fab, Diels-Alder catalytic with | L-KAPPA | Chimeric (chimeric) | IGKV1-110*01, IGKJ1*02, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202618-0) |
| B [auth H] | 1E9, VL F105>S, VH L52>W, M115>F Fab, Diels-Alder catalytic with | VH-CH1 | Chimeric (chimeric) | IGHV9-3-1*01, IGHJ4*01, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202618-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| A [auth L] | Light Chain | IGKV1 | Kappa | METHYL ({[(3AR,4R,7R,7AR)-2-(4-AMINOPHENYL)-1,3-DIOXOOCTAHYDRO-4H-4,7-ETHANOISOINDOL-4-YL]CARBAMOYL}OXY)ACETATE | SAbDab (2026-05-15) |
| B [auth H] | Heavy Chain | IGHV9 | - | METHYL ({[(3AR,4R,7R,7AR)-2-(4-AMINOPHENYL)-1,3-DIOXOOCTAHYDRO-4H-4,7-ETHANOISOINDOL-4-YL]CARBAMOYL}OXY)ACETATE | SAbDab (2026-05-15) |














