3P8C | pdb_00003p8c

Structure and Control of the Actin Regulatory WAVE Complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Nckap1-like	8045500	4004499	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Cullin repeat-like	8090821	3000059	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth F]	Abi_HHR, PF27594	e3p8cF1	A: alpha bundles	X: UDP-Glycosyltransferase/glycogen phosphorylase	H: UDP-Glycosyltransferase/glycogen phosphorylase	T: UDP-Glycosyltransferase/glycogen phosphorylase	F: Abi_HHR, PF27594	ECOD (develop294)
C [auth D]	WH2, PF27569	e3p8cD1	A: alpha bundles	X: Wiskott-Aldrich syndrome protein family member 1	H: Wiskott-Aldrich syndrome protein family member 1	T: Wiskott-Aldrich syndrome protein family member 1	F: WH2, PF27569	ECOD (develop294)
B	Nckap1	e3p8cB1	A: alpha bundles	X: Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1	H: Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1	T: Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1	F: Nckap1	ECOD (develop294)
A	FragX_IP,CYRIA-B_Rac1-bd	e3p8cA1	A: alpha bundles	X: Alpha-beta plaits	H: RNA-binding domain, RBD	T: RNA-binding domain, RBD	F: FragX_IP,CYRIA-B_Rac1-bd	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E [auth F]	6.10.140.1620	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
D [auth E]	1.20.5.110	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C [auth D]	1.20.5.340	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C [auth D]	6.10.280.150	Special	Helix non-globular	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth F]	PF07815	Abl-interactor HHR (Abi_HHR)	Abl-interactor HHR	-	Family
B	PF09735	Nck-associated protein 1 (Nckap1)	Nck-associated protein 1	-	Family
A	PF07159	CYRIA/CYRIB Rac1 binding domain (CYRIA-B_Rac1-bd)	CYRIA/CYRIB Rac1 binding domain	This domain has been annotated as Rac1-binding domain [1, 2]. It can be found in human CYRIA/CYRIB and at the N terminus of CYFIP1/2 [3]. CYFIP proteins are known RAC1 effectors that stimulate actin polymerization [3]. In mice, CYRIB (also known as C ...	This domain has been annotated as Rac1-binding domain [1, 2]. It can be found in human CYRIA/CYRIB and at the N terminus of CYFIP1/2 [3]. CYFIP proteins are known RAC1 effectors that stimulate actin polymerization [3]. In mice, CYRIB (also known as CYRI or FAM49B) negatively regulates RAC1-driven cytoskeletal remodelling and plays a role in restricting infection mediated by Mycobacterium tuberculosis and Listeria monocytogenes [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth F]	Abl interactor 2	protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity SH3 domain binding protein binding binding protein domain specific binding kinase binding enzyme binding cytoskeletal anchor activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding identical protein binding	positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process regulation of biological process regulation of actin filament organization actin cytoskeleton organization positive regulation of cytoskeleton organization actin filament organization biological regulation Arp2/3 complex-mediated actin nucleation positive regulation of supramolecular fiber organization regulation of organelle organization organelle organization positive regulation of actin nucleation regulation of actin cytoskeleton organization regulation of supramolecular fiber organization cellular process actin nucleation supramolecular fiber organization cytoskeleton organization adherens junction organization adherens junction assembly apical junction assembly cellular component biogenesis cell junction organization cellular component assembly cell junction assembly zonula adherens assembly cell-cell junction assembly cell-cell junction organization multicellular organismal process cell projection organization neuron projection development multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development regulation of synapse structure or activity synapse organization regulation of biological quality dendritic spine morphogenesis system development developmental process dendritic spine development postsynapse organization dendritic spine organization regulation of cell projection organization regulation of postsynapse organization nervous system development generation of neurons regulation of neuron projection development cellular developmental process regulation of developmental process plasma membrane bounded cell projection morphogenesis cell development cell morphogenesis neurogenesis dendrite development regulation of anatomical structure morphogenesis plasma membrane bounded cell projection organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis regulation of synapse organization neuron development regulation of dendritic spine morphogenesis neuron projection organization regulation of plasma membrane bounded cell projection organization cell migration cell motility protein phosphorylation phosphorylation primary metabolic process peptidyl-tyrosine modification macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process peptidyl-tyrosine phosphorylation protein modification process phosphorus metabolic process cellular response to stimulus small GTPase-mediated signal transduction response to stimulus signaling Rac protein signal transduction intracellular signal transduction cell communication intracellular signaling cassette signal transduction sensory organ development visual system development epithelial cell differentiation eye morphogenesis lens morphogenesis in camera-type eye animal organ morphogenesis sensory system development camera-type eye morphogenesis lens fiber cell morphogenesis epithelium development eye development animal organ development tissue development lens fiber cell development epithelial cell development sensory organ morphogenesis camera-type eye development lens fiber cell differentiation lens development in camera-type eye neuron migration mitophagy catabolic process macroautophagy autophagy autophagy of mitochondrion process utilizing autophagic mechanism plasma membrane bounded cell projection assembly regulation of lamellipodium assembly regulation of lamellipodium organization positive regulation of cell projection organization lamellipodium assembly positive regulation of cellular component biogenesis regulation of cell projection assembly positive regulation of lamellipodium assembly regulation of cellular component biogenesis positive regulation of lamellipodium organization regulation of plasma membrane bounded cell projection assembly lamellipodium organization cell projection assembly positive regulation of plasma membrane bounded cell projection assembly actin polymerization or depolymerization	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium intracellular anatomical structure cytoplasm cytosol filopodium tip actin-based cell projection filopodium cell-cell junction adherens junction anchoring junction cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium intracellular anatomical structure cytoplasm cytosol filopodium tip actin-based cell projection filopodium cell-cell junction adherens junction anchoring junction cell junction protein-containing complex SCAR complex intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle neuron spine synapse neuron projection dendritic spine somatodendritic compartment postsynapse dendrite dendritic tree membrane-bounded organelle nucleus intracellular membrane-bounded organelle
D [auth E]	Probable protein BRICK1	protein-containing complex binding binding identical protein binding protein binding	positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process regulation of biological process regulation of actin filament organization actin cytoskeleton organization positive regulation of cytoskeleton organization actin filament organization biological regulation Arp2/3 complex-mediated actin nucleation positive regulation of supramolecular fiber organization regulation of organelle organization organelle organization positive regulation of actin nucleation regulation of actin cytoskeleton organization regulation of supramolecular fiber organization cellular process actin nucleation supramolecular fiber organization cytoskeleton organization cellular response to stimulus small GTPase-mediated signal transduction response to stimulus signaling Rac protein signal transduction intracellular signal transduction cell communication intracellular signaling cassette signal transduction fibroblast proliferation cell population proliferation protein-containing complex organization positive regulation of cellular component biogenesis regulation of cellular component biogenesis cellular component biogenesis positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly positive regulation of cell population proliferation regulation of fibroblast proliferation regulation of cell population proliferation positive regulation of fibroblast proliferation cell motility cell projection organization plasma membrane bounded cell projection assembly regulation of lamellipodium assembly regulation of lamellipodium organization positive regulation of cell projection organization lamellipodium assembly plasma membrane bounded cell projection organization regulation of cell projection organization regulation of cell projection assembly positive regulation of lamellipodium assembly positive regulation of lamellipodium organization regulation of plasma membrane bounded cell projection assembly lamellipodium organization cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly developmental process multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching chordate embryonic development anatomical structure development embryo development in utero embryonic development regulation of cellular component size regulation of biological quality actin polymerization or depolymerization regulation of actin polymerization or depolymerization regulation of actin filament length regulation of anatomical structure size	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium protein-containing complex intracellular anatomical structure SCAR complex cytoplasm intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium protein-containing complex intracellular anatomical structure SCAR complex cytoplasm intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytosol
C [auth D]	Wiskott-Aldrich syndrome protein family member 1	cytoskeletal protein binding actin binding protein binding binding protein kinase A binding protein kinase A regulatory subunit binding protein-containing complex binding Arp2/3 complex binding	positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process regulation of biological process regulation of actin filament organization actin cytoskeleton organization positive regulation of cytoskeleton organization actin filament organization biological regulation Arp2/3 complex-mediated actin nucleation positive regulation of supramolecular fiber organization regulation of organelle organization organelle organization positive regulation of actin nucleation regulation of actin cytoskeleton organization regulation of supramolecular fiber organization cellular process actin nucleation supramolecular fiber organization cytoskeleton organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly multicellular organismal process cellular developmental process developmental growth cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell growth cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development dendrite extension system development developmental process neuron projection extension plasma membrane bounded cell projection organization developmental cell growth growth nervous system development developmental growth involved in morphogenesis generation of neurons anatomical structure morphogenesis neuron development cellular response to endogenous stimulus cellular response to growth factor stimulus response to stimulus response to endogenous stimulus cellular response to nerve growth factor stimulus cellular response to brain-derived neurotrophic factor stimulus response to nerve growth factor response to growth factor cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction signaling regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway cell communication positive regulation of response to stimulus neurotrophin signaling pathway signal transduction positive regulation of neurotrophin TRK receptor signaling pathway enzyme-linked receptor protein signaling pathway regulation of signaling cell surface receptor signaling pathway regulation of cellular response to growth factor stimulus neurotrophin TRK receptor signaling pathway regulation of neurotrophin TRK receptor signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling protein polymerization actin polymerization or depolymerization actin filament polymerization establishment of organelle localization cellular localization organelle transport along microtubule transport establishment of mitochondrion localization intracellular transport establishment of localization dendritic transport dendritic transport of mitochondrion localization mitochondrion localization establishment of mitochondrion localization, microtubule-mediated axo-dendritic transport mitochondrion transport along microtubule organelle localization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process cell junction organization modification of postsynaptic actin cytoskeleton synapse organization modification of postsynaptic structure modification of synaptic structure small GTPase-mediated signal transduction Rac protein signal transduction intracellular signal transduction intracellular signaling cassette lamellipodium organization lamellipodium morphogenesis mitochondrion organization import into cell receptor-mediated endocytosis endocytosis vesicle-mediated transport	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol protein-containing complex neuron projection cytoplasm neuron projection dendrite cytoplasm somatodendritic compartment dendrite dendritic tree SCAR complex membrane-bounded organelle mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane postsynapse synapse
B	Nck-associated protein 1	-	positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process regulation of biological process regulation of actin filament organization actin cytoskeleton organization positive regulation of cytoskeleton organization actin filament organization biological regulation Arp2/3 complex-mediated actin nucleation positive regulation of supramolecular fiber organization regulation of organelle organization organelle organization positive regulation of actin nucleation regulation of actin cytoskeleton organization regulation of supramolecular fiber organization cellular process actin nucleation supramolecular fiber organization cytoskeleton organization developmental process multicellular organismal process embryonic morphogenesis embryo development gastrulation multicellular organism development anatomical structure morphogenesis ameboidal-type cell migration anatomical structure development cell migration cell motility cell migration involved in gastrulation localization apical protein localization macromolecule localization intracellular protein localization regulation of protein stability regulation of biological quality protein stabilization central nervous system development nervous system development system development digestive system development foregut morphogenesis tube development digestive tract development tube morphogenesis embryonic foregut morphogenesis digestive tract morphogenesis lamellipodium assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component assembly lamellipodium organization cell projection assembly establishment or maintenance of actin cytoskeleton polarity establishment or maintenance of cytoskeleton polarity establishment or maintenance of cell polarity somitogenesis epithelium development chordate embryonic development segmentation anterior/posterior pattern specification pattern specification process tissue development regionalization embryo development ending in birth or egg hatching somite development anatomical structure formation involved in morphogenesis mesoderm morphogenesis mesenchyme morphogenesis animal organ development mesenchyme development tissue morphogenesis paraxial mesoderm development animal organ morphogenesis paraxial mesoderm morphogenesis mesoderm development embryonic organ morphogenesis notochord morphogenesis embryonic organ development notochord development apoptotic process cell death programmed cell death endoderm development heart development embryonic heart tube development circulatory system development cellular developmental process plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation generation of neurons neuron development in utero embryonic development embryonic epithelial tube formation tube formation epithelial tube formation primary neural tube formation epithelial tube morphogenesis morphogenesis of embryonic epithelium neural tube development morphogenesis of an epithelium neural tube closure neural tube formation tube closure cellular response to stimulus small GTPase-mediated signal transduction response to stimulus signaling Rac protein signal transduction intracellular signal transduction cell communication intracellular signaling cassette signal transduction cortical actin cytoskeleton organization cortical cytoskeleton organization regulation of cellular component size regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of protein polymerization protein-containing complex assembly regulation of actin filament polymerization protein polymerization actin polymerization or depolymerization actin filament polymerization protein-containing complex organization positive regulation of cellular component biogenesis regulation of actin polymerization or depolymerization regulation of cellular component biogenesis regulation of protein polymerization regulation of actin filament length positive regulation of actin filament polymerization regulation of anatomical structure size regulation of localization regulation of protein localization embryonic body morphogenesis body morphogenesis blastoderm segmentation zygotic determination of anterior/posterior axis, embryo embryonic pattern specification anterior/posterior axis specification, embryo tripartite regional subdivision embryonic axis specification anterior/posterior axis specification axis specification basal protein localization regulation of lamellipodium assembly regulation of lamellipodium organization positive regulation of cell projection organization regulation of cell projection organization regulation of cell projection assembly positive regulation of lamellipodium assembly positive regulation of lamellipodium organization regulation of plasma membrane bounded cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly mesodermal cell migration	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol plasma membrane membrane leading edge membrane cell periphery plasma membrane region lamellipodium membrane cell projection membrane protein-containing complex SCAR complex ruffle polymeric cytoskeletal fiber actin filament intracellular membraneless organelle actin cytoskeleton filamentous actin intracellular organelle cytoskeleton membraneless organelle supramolecular fiber supramolecular polymer supramolecular complex postsynapse synapse
A	Cytoplasmic FMR1-interacting protein 1	small GTPase binding protein binding binding enzyme binding GTPase binding cytoskeletal protein binding actin binding protein-containing complex binding actin filament binding RNA binding RNA 7-methylguanosine cap binding nucleic acid binding RNA cap binding translation regulator activity small GTPase binding protein binding binding enzyme binding GTPase binding cytoskeletal protein binding actin binding protein-containing complex binding actin filament binding RNA binding RNA 7-methylguanosine cap binding nucleic acid binding RNA cap binding translation regulator activity translation repressor activity	positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process regulation of biological process regulation of actin filament organization actin cytoskeleton organization positive regulation of cytoskeleton organization actin filament organization biological regulation Arp2/3 complex-mediated actin nucleation positive regulation of supramolecular fiber organization regulation of organelle organization organelle organization positive regulation of actin nucleation regulation of actin cytoskeleton organization regulation of supramolecular fiber organization cellular process actin nucleation supramolecular fiber organization cytoskeleton organization multicellular organismal process cellular developmental process developmental growth cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell growth cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development dendrite extension system development developmental process neuron projection extension plasma membrane bounded cell projection organization developmental cell growth growth nervous system development developmental growth involved in morphogenesis generation of neurons anatomical structure morphogenesis neuron development lamellipodium assembly plasma membrane bounded cell projection assembly cellular component biogenesis cellular component assembly lamellipodium organization cell projection assembly modulation of chemical synaptic transmission signaling regulation of translation at synapse, modulating synaptic transmission protein biosynthetic process cell communication regulation of primary metabolic process post-transcriptional regulation of gene expression synaptic signaling postsynaptic modulation of chemical synaptic transmission protein metabolic process regulation of biosynthetic process trans-synaptic signaling regulation of signaling regulation of protein metabolic process cell-cell signaling regulation of translation at postsynapse primary metabolic process regulation of macromolecule metabolic process regulation of translation at synapse gene expression translation macromolecule biosynthetic process chemical synaptic transmission regulation of translation at postsynapse, modulating synaptic transmission regulation of gene expression regulation of trans-synaptic signaling biosynthetic process regulation of translation anterograde trans-synaptic signaling regulation of cell communication regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process cellular response to stimulus positive regulation of cell communication cellular response to growth factor stimulus positive regulation of signal transduction response to stimulus regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway positive regulation of response to stimulus cellular response to endogenous stimulus neurotrophin signaling pathway signal transduction positive regulation of neurotrophin TRK receptor signaling pathway enzyme-linked receptor protein signaling pathway cell surface receptor signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus neurotrophin TRK receptor signaling pathway regulation of neurotrophin TRK receptor signaling pathway regulation of response to stimulus response to growth factor positive regulation of signaling system process nervous system process cognition regulation of developmental process regulation of cell shape regulation of cell morphogenesis regulation of biological quality regulation of anatomical structure morphogenesis small GTPase-mediated signal transduction Rac protein signal transduction intracellular signal transduction intracellular signaling cassette axonogenesis axon guidance axon development cell morphogenesis involved in neuron differentiation neuron projection guidance ruffle organization axon extension regulation of modification of postsynaptic actin cytoskeleton regulation of modification of synaptic structure regulation of synapse organization cell junction organization modification of postsynaptic actin cytoskeleton regulation of synapse structure or activity regulation of modification of postsynaptic structure synapse organization modification of synaptic structure modification of postsynaptic structure regulation of lamellipodium assembly regulation of lamellipodium organization positive regulation of cell projection organization positive regulation of cellular component biogenesis regulation of cell projection organization regulation of cell projection assembly positive regulation of lamellipodium assembly regulation of cellular component biogenesis positive regulation of lamellipodium organization regulation of plasma membrane bounded cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly regulation of cellular component size regulation of protein-containing complex assembly protein-containing complex assembly regulation of actin filament polymerization protein polymerization actin polymerization or depolymerization actin filament polymerization protein-containing complex organization regulation of actin polymerization or depolymerization regulation of protein polymerization regulation of actin filament length regulation of anatomical structure size	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol neuron projection tertiary granule lumen membrane-enclosed lumen intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen tertiary granule intracellular organelle organelle lumen cytoplasmic vesicle secretory granule secretory vesicle protein-containing complex SCAR complex vesicle lumen cytoplasmic vesicle lumen secretory granule lumen synapse ruffle perinuclear region of cytoplasm specific granule lumen specific granule postsynapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth F]	IPR000727	Target SNARE coiled-coil homology domain	Domain
E [auth F]	IPR036028	SH3-like domain superfamily	Homologous Superfamily
E [auth F]	IPR028457	ABI family	Family
E [auth F]	IPR001452	SH3 domain	Domain
E [auth F]	IPR035726	Abl interactor 2, SH3 domain	Domain
E [auth F]	IPR012849	Abl-interactor, homeo-domain homologous domain	Domain
D [auth E]	IPR033378	Protein BRICK1	Family
C [auth D]	IPR003124	WH2 domain	Domain
C [auth D]	IPR028288	SCAR/WAVE family	Family
B	IPR019137	Nck-associated protein 1	Family
A	IPR008081	Cytoplasmic FMR1-interacting	Family
A	IPR009828	CYRIA/CYRIB, Rac1 binding domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E [auth F]	Pharos: Q9NYB9	acute myeloid leukemia glioblastoma large cell medulloblastoma malignant glioma ovarian cancer psoriasis tuberculosis atypical teratoid rhabdoid tumor hydrolethalus syndrome lung cancer malignant mesothelioma pancreatic intraductal papillary-mucinous neoplasm sinusitis breast cancer juvenile dermatomyositis acute myeloid leukemia glioblastoma large cell medulloblastoma malignant glioma ovarian cancer psoriasis tuberculosis atypical teratoid rhabdoid tumor hydrolethalus syndrome lung cancer malignant mesothelioma pancreatic intraductal papillary-mucinous neoplasm sinusitis breast cancer juvenile dermatomyositis malignant ependymoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia spina bifida
D [auth E]	Pharos: Q8WUW1	ovarian cancer pancreatic ductal adenocarcinoma
C [auth D]	Pharos: Q92558	primitive neuroectodermal tumor tuberculosis adrenal cortex carcinoma epilepsy intellectual disability lung carcinoma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm rheumatoid arthritis astrocytic tumor Epileptic encephalopathy invasive ductal breast carcinoma malignant ependymoma non-small cell lung carcinoma primitive neuroectodermal tumor tuberculosis adrenal cortex carcinoma epilepsy intellectual disability lung carcinoma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm rheumatoid arthritis astrocytic tumor Epileptic encephalopathy invasive ductal breast carcinoma malignant ependymoma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor glioblastoma lung cancer malignant glioma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma
B	Pharos: Q9Y2A7	Neurodevelopmental Disorders breast cancer MALT lymphoma intellectual disability lung cancer osteosarcoma
A	Pharos: Q7L576	Angelman syndrome dermatomyositis fragile X syndrome lymphoplasmacytic lymphoma ovarian cancer schizophrenia astrocytic tumor Duchenne muscular dystrophy glioblastoma medulloblastoma plasma cell myeloma tuberculosis B-cell chronic lymphocytic leukemia Emery-Dreifuss muscular dystrophy juvenile dermatomyositis Angelman syndrome dermatomyositis fragile X syndrome lymphoplasmacytic lymphoma ovarian cancer schizophrenia astrocytic tumor Duchenne muscular dystrophy glioblastoma medulloblastoma plasma cell myeloma tuberculosis B-cell chronic lymphocytic leukemia Emery-Dreifuss muscular dystrophy juvenile dermatomyositis myopathy psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.