Annotations: 3PQ1

Crystal structure of human mitochondrial poly(A) polymerase (PAPD1)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	MTPAP-like_central	e3pq1B1	A: alpha arrays	X: Cysteine proteinases-like	H: Cysteine proteinases	T: Cysteine proteinases	F: MTPAP-like_central	ECOD (v295)
B	Pkinase, PK_Tyr_Ser-Thr	e3pq1B2	A: alpha arrays	X: Cysteine proteinases-like	H: Cysteine proteinases	T: Cysteine proteinases	F: Pkinase, PK_Tyr_Ser-Thr	ECOD (v295)
A	MTPAP-like_central	e3pq1A1	A: alpha arrays	X: Alpha-beta plaits	H: RNA-binding domain, RBD	T: RNA-binding domain, RBD	F: MTPAP-like_central	ECOD (v295)
A	RL	e3pq1A3	A: alpha arrays	X: Alpha-beta plaits	H: RNA-binding domain, RBD	T: RNA-binding domain, RBD	F: RL	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03828	Cid1 family poly A polymerase (PAP_assoc)	Cid1 family poly A polymerase	-	Family
A, B	PF17797	RL domain (RL)	RL domain	The RRM-like (RL) domain is found in the N-terminal region of the polyA polymerase PAPD1. It contributes to PAPD1 dimerization and has a fold similar to RNP-type RBDs [1].	Domain
A, B	PF22600	Poly(A) RNA polymerase, mitochondrial-like, central palm domain (MTPAP-like_central)	Poly(A) RNA polymerase, mitochondrial-like, central palm domain	This domain is found in human Poly(A) RNA polymerase, mitochondrial (MTPAP) and similar proteins from eukaryotes. MTPAP is a noncanonical polymerase that creates the 3' poly(A) tail of mitochondrial transcripts. It contains three domains: a N-termina ...	This domain is found in human Poly(A) RNA polymerase, mitochondrial (MTPAP) and similar proteins from eukaryotes. MTPAP is a noncanonical polymerase that creates the 3' poly(A) tail of mitochondrial transcripts. It contains three domains: a N-terminal domain RL (Pfam:PF17797) and the canonical palm (this entry) and fingers domains. This domain shows a five -stranded beta-sheet with the three catalytic aspartic acid residues located on its surface [6], together with several alpha- helices, forming an alpha-beta configuration.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Poly(A) RNA polymerase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding UTP binding pyrimidine ribonucleotide binding pyrimidine nucleotide binding identical protein binding protein binding protein homodimerization activity protein dimerization activity manganese ion binding transition metal ion binding poly(A) RNA polymerase activity adenylyltransferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA binding nucleic acid binding	RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing metabolic process cellular process RNA processing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing metabolic process cellular process RNA processing macromolecule metabolic process DNA-templated transcription mRNA processing mRNA metabolic process mitochondrial gene expression mitochondrial mRNA polyadenylation mitochondrial RNA processing mitochondrial RNA metabolic process regulation of cellular process catabolic process negative regulation of biological process macromolecule catabolic process negative regulation of cellular process RNA catabolic process negative regulation of macromolecule metabolic process histone mRNA catabolic process regulation of biosynthetic process mRNA catabolic process nuclear-transcribed mRNA catabolic process regulation of biological process histone mRNA metabolic process negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process regulation of macromolecule biosynthetic process regulation of metabolic process mitochondrial RNA 3'-end processing	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR054708	Poly(A) RNA polymerase, mitochondrial-like, central palm domain	Domain
A, B	IPR041252	RL domain	Domain
A, B	IPR043519	Nucleotidyltransferase superfamily	Homologous Superfamily
A, B	IPR002058	PAP/25A-associated	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: Q9NVV4	melanoma spastic ataxia 4 Ataxias, Hereditary inflammatory bowel disease lung cancer osteosarcoma Crohn disease intellectual disability malignant mesothelioma ovarian cancer cutaneous melanoma juvenile dermatomyositis medulloblastoma neurodegenerative disease psoriasis

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