3Q4I | pdb_00003q4i

Crystal structure of CDP-Chase in complex with Gd3+


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Arvee3q4iA2 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: rveECOD (v294.1)
ATetR_Ne3q4iA1 A: a/b three-layered sandwichesX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v294.1)
Brvee3q4iB2 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: rveECOD (v294.1)
BMoCF_biosynthe3q4iB1 A: a/b three-layered sandwichesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: MoCF_biosynthECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00293NUDIX domain (NUDIX)NUDIX domainDomain
A, B
PF12535UDP-X-like, N-terminal oligomerisation domain (Nudix_N)UDP-X-like, N-terminal oligomerisation domainThis entry represents an alpha-helical oligomerisation domain which is found at the N-terminal end of a number of phosphatases such as UDP-X diphosphatase from Streptococcus pneumoniae PDB:4HFQ and CDP-Choline Pyrophosphatase from Bacillus cereus PDB ...This entry represents an alpha-helical oligomerisation domain which is found at the N-terminal end of a number of phosphatases such as UDP-X diphosphatase from Streptococcus pneumoniae PDB:4HFQ and CDP-Choline Pyrophosphatase from Bacillus cereus PDB:3Q1P, and related bacterial proteins. This domain precedes the Nudix domain Pfam:PF00293 and this arrangement is typical for this group of phosphatases. UDP-X diphosphatase catalyses the last step of the Mur pathway of peptidoglycan biosynthesis and can hydrolyse the Mur pathway substrates UDP-N-acetylmuramic acid and UDP-N-acetylmuramoyl-L-alanine. In addition to its Nudix catalytic activity, the enzyme has a 3'-5' RNA exonuclease activity [2]. CDP-Choline Pyrophosphatase catalyses the hydrolysis of CDP-choline to produce CMP and phosphocholine and in addition, the enzyme has a 3'-5' RNA exonuclease activity [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Phosphohydrolase (MutT/nudix family protein) -