Crystal structure of Fab of rhesus mAb 2.5B specific for quaternary neutralizing epitope of HIV-1 gp120
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth I] | PQQ_2 | e3q6gI1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: PQQ_2 | ECOD (v294.1) |
| B [auth H] | PH | e3q6gH1 | A: a/b three-layered sandwiches | X: EF-hand | H: Insect pheromone/odorant-binding proteins | T: Insect pheromone/odorant-binding proteins | F: PH | ECOD (v294.1) |
| C [auth M] | PQQ_2 | e3q6gM1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: PQQ_2 | ECOD (v294.1) |
| A [auth L] | Rubrerythrin | e3q6gL1 | A: a/b three-layered sandwiches | X: Thioredoxin-like | H: Thioredoxin-like | T: Thioredoxin-like | F: Rubrerythrin | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D [auth I] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| C [auth M] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| A [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| B [auth H], D [auth I] | 2.5B mAb, anti-gp120 [HIV-1] | VH-CH1 | Homo sapiens (human) | IGHV4-59*01, IGHV4-59*08, IGHJ6*01, IGHJ6*02, IGHG1*01, IGHG1*02, IGHG1*03 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_LAMBDA | IMGT (202613-0) |
| A [auth L], C [auth M] | 2.5B mAb, anti-gp120 [HIV-1] | L-LAMBDA | Homo sapiens (human) | IGLV3-21*02, IGLJ2*01, IGLJ3*01, IGLC6*01 | V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA | IG | FAB-GAMMA-1_LAMBDA | IMGT (202613-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| B [auth H], D [auth I] | Heavy Chain | IGHV4 | - | - | SAbDab (2026-04-10) |
| A [auth L], C [auth M] | Light Chain | IGLV3 | Lambda | - | SAbDab (2026-04-10) |














