3Q6G | pdb_00003q6g

Crystal structure of Fab of rhesus mAb 2.5B specific for quaternary neutralizing epitope of HIV-1 gp120


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth I]PQQ_2e3q6gI1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: PQQ_2ECOD (v294.1)
B [auth H]PHe3q6gH1 A: a/b three-layered sandwichesX: EF-handH: Insect pheromone/odorant-binding proteinsT: Insect pheromone/odorant-binding proteinsF: PHECOD (v294.1)
C [auth M]PQQ_2e3q6gM1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: PQQ_2ECOD (v294.1)
A [auth L]Rubrerythrine3q6gL1 A: a/b three-layered sandwichesX: Thioredoxin-likeH: Thioredoxin-likeT: Thioredoxin-likeF: RubrerythrinECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth I]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
C [auth M]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth H],
D [auth I]
2.5B mAb, anti-gp120 [HIV-1] VH-CH1 Homo sapiens (human) IGHV4-59*01, IGHV4-59*08, IGHJ6*01, IGHJ6*02, IGHG1*01, IGHG1*02, IGHG1*03 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_LAMBDA IMGT (202613-0)
A [auth L],
C [auth M]
2.5B mAb, anti-gp120 [HIV-1] L-LAMBDA Homo sapiens (human) IGLV3-21*02, IGLJ2*01, IGLJ3*01, IGLC6*01 V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA IG FAB-GAMMA-1_LAMBDA IMGT (202613-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth H],
D [auth I]
Heavy ChainIGHV4 --SAbDab (2026-04-10)
A [auth L],
C [auth M]
Light ChainIGLV3 Lambda-SAbDab (2026-04-10)