The crystal structure of chemically synthesized VEGF-A
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth B] | FeoB_Cyto | e3qtkB1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: FeoB_Cyto | ECOD (develop294) |
| D [auth C] | FeoB_Cyto | e3qtkC1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: FeoB_Cyto | ECOD (develop294) |
| F | FeoB_Cyto | e3qtkF1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: FeoB_Cyto | ECOD (develop294) |
| E | FeoB_Cyto | e3qtkE1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: FeoB_Cyto | ECOD (develop294) |
| B [auth D] | FeoB_Cyto | e3qtkD1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: FeoB_Cyto | ECOD (develop294) |
| A | Hexapep | e3qtkA1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Hexapep | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C [auth B] | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
| D [auth C] | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
| F | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
| E | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
| B [auth D] | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
| A | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00341 | PDGF/VEGF domain (PDGF) | PDGF/VEGF domain | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR029034 | Cystine-knot cytokine | Homologous Superfamily | |
| IPR036841 | Vascular endothelial growth factor, heparin-binding domain superfamily | Homologous Superfamily | |
| IPR023581 | Platelet-derived growth factor, conserved site | Conserved Site | |
| IPR000072 | PDGF/VEGF domain | Domain | |
| IPR027928 | Vascular endothelial growth factor, heparin-binding domain | Domain | |
| IPR050507 | Platelet-derived/Vascular endothelial growth factor | Family |














