3RL0 | pdb_00003rl0

Truncated SNARE complex with complexin (P1)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilySNARE fusion complex 8043665 3001549 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilySNARE fusion complex 8043665 3001549 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySNARE fusion complex 8043665 3001549 SCOP2B (2022-06-29)
NSCOP2B SuperfamilySNARE fusion complex 8043665 3001549 SCOP2B (2022-06-29)
RSCOP2B SuperfamilySNARE fusion complex 8043665 3001549 SCOP2B (2022-06-29)
VSCOP2B SuperfamilySNARE fusion complex 8043665 3001549 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilySNARE fusion complex 8043665 3001549 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySNARE fusion complex 8043665 3001549 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilySNARE fusion complex 8082799 3001549 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilySNARE fusion complex 8082799 3001549 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilySNARE fusion complex 8082799 3001549 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilySNARE fusion complex 8082799 3001549 SCOP2B (2022-06-29)
KA [auth k]SCOP2B SuperfamilySNARE fusion complex 8082799 3001549 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilySNARE fusion complex 8082799 3001549 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilySNARE fusion complex 8082799 3001549 SCOP2B (2022-06-29)
NA [auth n]SCOP2B SuperfamilySNARE fusion complex 8082799 3001549 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySNARE fusion complex 8044158 3001549 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilySNARE fusion complex 8044158 3001549 SCOP2B (2022-06-29)
HSCOP2B SuperfamilySNARE fusion complex 8044158 3001549 SCOP2B (2022-06-29)
LSCOP2B SuperfamilySNARE fusion complex 8044158 3001549 SCOP2B (2022-06-29)
PSCOP2B SuperfamilySNARE fusion complex 8044158 3001549 SCOP2B (2022-06-29)
XSCOP2B SuperfamilySNARE fusion complex 8044158 3001549 SCOP2B (2022-06-29)
TSCOP2B SuperfamilySNARE fusion complex 8044158 3001549 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilySNARE fusion complex 8044158 3001549 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySNARE fusion complex 8079907 3001549 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilySNARE fusion complex 8079907 3001549 SCOP2B (2022-06-29)
ESCOP2B SuperfamilySNARE fusion complex 8079907 3001549 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySNARE fusion complex 8079907 3001549 SCOP2B (2022-06-29)
MSCOP2B SuperfamilySNARE fusion complex 8079907 3001549 SCOP2B (2022-06-29)
QSCOP2B SuperfamilySNARE fusion complex 8079907 3001549 SCOP2B (2022-06-29)
YSCOP2B SuperfamilySNARE fusion complex 8079907 3001549 SCOP2B (2022-06-29)
USCOP2B SuperfamilySNARE fusion complex 8079907 3001549 SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
DA [auth d]1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
J1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
N1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
R1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
V1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
Z1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
F1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
GA [auth g]1.20.5.580 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single Helix binCATH (4.3.0)
HA [auth h]1.20.5.580 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single Helix binCATH (4.3.0)
IA [auth i]1.20.5.580 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single Helix binCATH (4.3.0)
JA [auth j]1.20.5.580 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single Helix binCATH (4.3.0)
KA [auth k]1.20.5.580 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single Helix binCATH (4.3.0)
LA [auth l]1.20.5.580 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single Helix binCATH (4.3.0)
MA [auth m]1.20.5.580 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single Helix binCATH (4.3.0)
NA [auth n]1.20.5.580 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single Helix binCATH (4.3.0)
D1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
FA [auth f]1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
H1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
L1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
P1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
X1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
T1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
BA [auth b]1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
AA [auth a]1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
C1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
G1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
K1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
O1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
W1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
S1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
EA [auth e]1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF05739SNARE domain (SNARE)SNARE domainMost if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE dom ...Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. It is composed of about 70 amino acids arranged in an alpha-helical structure [1].
Domain
PF00957Synaptobrevin (Synaptobrevin)SynaptobrevinThe entry represents the entire v-SNARE coiled-coil homology domain. The process of vesicular membrane fusion in eukaryotic cells depends on a conserved fusion machinery called SNARE (soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein ...The entry represents the entire v-SNARE coiled-coil homology domain. The process of vesicular membrane fusion in eukaryotic cells depends on a conserved fusion machinery called SNARE (soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors). In the process of vesicle docking, proteins present on the vesicle (v-SNARE) have to bind to their counterpart on the target membrane (t-SNARE) to form a core complex that can then recruit the soluble proteins NSF and SNAP This so called fusion complex can then disassemble after ATP hydrolysis mediated by the ATPase NSF in a process that leads to membrane fusion and the release of the vesicle contents. v-SNAREs include proteins homologous to synaptobrevi [1, 2, 3].
Domain
PF05835Synaphin protein (Synaphin)Synaphin protein- Family
PF00957Synaptobrevin (Synaptobrevin)SynaptobrevinThe entry represents the entire v-SNARE coiled-coil homology domain. The process of vesicular membrane fusion in eukaryotic cells depends on a conserved fusion machinery called SNARE (soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein ...The entry represents the entire v-SNARE coiled-coil homology domain. The process of vesicular membrane fusion in eukaryotic cells depends on a conserved fusion machinery called SNARE (soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors). In the process of vesicle docking, proteins present on the vesicle (v-SNARE) have to bind to their counterpart on the target membrane (t-SNARE) to form a core complex that can then recruit the soluble proteins NSF and SNAP This so called fusion complex can then disassemble after ATP hydrolysis mediated by the ATPase NSF in a process that leads to membrane fusion and the release of the vesicle contents. v-SNAREs include proteins homologous to synaptobrevi [1, 2, 3].
Domain
PF05835Synaphin protein (Synaphin)Synaphin protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Syntaxin-1A
Complexin-1
Synaptosomal-associated protein 25
Synaptosomal-associated protein 25
Vesicle-associated membrane protein 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000727Target SNARE coiled-coil homology domainDomain
IPR006012Syntaxin/epimorphin, conserved siteConserved Site
IPR010989SNAREHomologous Superfamily
IPR006011Syntaxin, N-terminal domainDomain
IPR045242SyntaxinFamily
IPR008849SynaphinFamily
IPR000727Target SNARE coiled-coil homology domainDomain
IPR039077SNAP25, N-terminal SNARE motif, chordatesDomain
IPR000928SNAP-25 domainDomain
IPR000727Target SNARE coiled-coil homology domainDomain
IPR039077SNAP25, N-terminal SNARE motif, chordatesDomain
IPR000928SNAP-25 domainDomain
IPR016444Synaptobrevin/Vesicle-associated membrane proteinFamily
IPR042855v-SNARE, coiled-coil homology domainDomain
IPR001388Synaptobrevin-likeFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosO14810
PharosP60880
PharosP60880
PharosP63027