Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF07571e3s3mA1 A: beta barrelsX: SH3H: SH3T: SH3F: EUF07571ECOD (1.6)
Azf-H2C2_likee3s3mA2 A: alpha arraysX: HTHH: HTHT: tri-helicalF: zf-H2C2_likeECOD (1.6)
Arvee3s3mA3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)
Brvee3s3mB1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: rveECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.340.70 Mainly Alpha Orthogonal Bundle Endonuclease III domain 1CATH (4.3.0)
A2.30.30.140 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
A3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
A6.10.20.110 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (4.3.0)
B3.30.420.10 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF18103Retroviral integrase C-terminal SH3 domain (SH3_11)Retroviral integrase C-terminal SH3 domainThis is the carboxy-terminal domain (CTD) found in retroviral integrase, an essential retroviral enzyme that binds both termini of linear viral DNA and inserts them into a host cell chromosome. The CTD adopts an SH3-like fold. Each CTD makes contact ...Domain
A, B
PF17921Integrase zinc binding domain (Integrase_H2C2)Integrase zinc binding domainThis zinc binding domain is found in a wide variety of integrase proteins. Domain
A, B
PF00665Integrase core domain (rve)Integrase core domainIntegrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The ca ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
PFV integrase
5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'---
5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'---