3S4Z | pdb_00003s4z

Structure of a Y DNA-FANCI complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	FANCI_S1-cap,FANCI_S1,FANCI_S2,FANCI_S3,FANCI_S4,FANCI_HD1,FANCI_HD2	e3s4zC1	A: a/b three-layered sandwiches	X: barrel domains in phase 1 flagellin	H: Class II aaRS and biotin synthetases	T: Class II aaRS and biotin synthetases	F: FANCI_S1-cap,FANCI_S1,FANCI_S2,FANCI_S3,FANCI_S4,FANCI_HD1,FANCI_HD2	ECOD (v294.1)
B	FANCI_S1-cap,FANCI_S1,FANCI_S2,FANCI_S3,FANCI_S4,FANCI_HD1,FANCI_HD2	e3s4zB1	A: a/b three-layered sandwiches	X: barrel domains in phase 1 flagellin	H: Class II aaRS and biotin synthetases	T: Class II aaRS and biotin synthetases	F: FANCI_S1-cap,FANCI_S1,FANCI_S2,FANCI_S3,FANCI_S4,FANCI_HD1,FANCI_HD2	ECOD (v294.1)
A	FANCI_S1-cap,FANCI_S1,FANCI_S2,FANCI_S3,FANCI_S4,FANCI_HD1,FANCI_HD2	e3s4zA2	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: RIFT-related	T: double psi	F: FANCI_S1-cap,FANCI_S1,FANCI_S2,FANCI_S3,FANCI_S4,FANCI_HD1,FANCI_HD2	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF14674	FANCI solenoid 1 cap (FANCI_S1-cap)	FANCI solenoid 1 cap	-	Repeat
A, B, C	PF14675	FANCI solenoid 1 (FANCI_S1)	FANCI solenoid 1	-	Repeat
A, B, C	PF14676	FANCI solenoid 2 (FANCI_S2)	FANCI solenoid 2	-	Repeat
A, B, C	PF14677	FANCI solenoid 3 (FANCI_S3)	FANCI solenoid 3	-	Repeat
A, B, C	PF14678	FANCI solenoid 4 (FANCI_S4)	FANCI solenoid 4	-	Repeat
A, B, C	PF14679	FANCI helical domain 1 (FANCI_HD1)	FANCI helical domain 1	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	dna repair 1	protein binding binding DNA polymerase binding enzyme binding	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair regulation of cellular process cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair regulation of cellular process regulation of protein modification process positive regulation of protein metabolic process positive regulation of biological process regulation of protein ubiquitination positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process protein ubiquitination positive regulation of macromolecule metabolic process protein metabolic process regulation of protein modification by small protein conjugation or removal protein modification process positive regulation of cellular process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of biological process regulation of post-translational protein modification regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process macromolecule modification post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal	protein-containing complex catalytic complex DNA repair complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle Fanconi anaemia nuclear complex intracellular organelle organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle protein-containing complex catalytic complex DNA repair complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle Fanconi anaemia nuclear complex intracellular organelle organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR029313	FANCI solenoid 3 domain	Domain
A, B, C	IPR029310	FANCI helical domain 1	Domain
A, B, C	IPR029315	FANCI solenoid 2 domain	Domain
A, B, C	IPR029314	FANCI solenoid 4 domain	Domain
A, B, C	IPR029312	FANCI helical domain 2	Domain
A, B, C	IPR026171	Fanconi anemia group I protein	Family
A, B, C	IPR029305	FANCI solenoid 1 cap	Domain
A, B, C	IPR029308	FANCI solenoid 1 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.