3SH5 | pdb_00003sh5

Calcium-bound Laminin G like domain 3 from human perlecan

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3sh5a_	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	automated matches	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	WD40, eIF2A, Beta-prop_WDR5	e3sh5A1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: WD40, eIF2A, Beta-prop_WDR5	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02210	Laminin G domain (Laminin_G_2)	Laminin G domain	This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	LG3 peptide	amyloid-beta binding binding peptide binding structural molecule activity extracellular matrix structural constituent extracellular matrix structural constituent conferring compression resistance molecular adaptor activity cation binding ion binding calcium ion binding metal ion binding small molecule binding collagen binding protein-containing complex binding amyloid-beta binding binding peptide binding structural molecule activity extracellular matrix structural constituent extracellular matrix structural constituent conferring compression resistance molecular adaptor activity cation binding ion binding calcium ion binding metal ion binding small molecule binding collagen binding protein-containing complex binding collagen V binding low-density lipoprotein particle receptor binding protein binding signaling receptor binding lipoprotein particle receptor binding	response to stimulus response to chemical response to xenobiotic stimulus developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development circulatory system development response to stimulus response to chemical response to xenobiotic stimulus developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development circulatory system development response to decreased oxygen levels response to hypoxia response to stress response to oxygen levels response to abiotic stimulus localization import into cell transport cellular process receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport cell adhesion regulation of biological process regulation of cellular process regulation of cell adhesion biological regulation negative regulation of cellular process negative regulation of biological process negative regulation of cell adhesion cellular response to stimulus cell surface receptor signaling pathway signaling smoothened signaling pathway cell communication signal transduction cellular developmental process cell differentiation negative regulation of signaling modulation of chemical synaptic transmission negative regulation of synaptic transmission negative regulation of cell communication synaptic signaling negative regulation of synaptic transmission, cholinergic trans-synaptic signaling regulation of signaling cell-cell signaling chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling synaptic transmission, cholinergic regulation of cell communication regulation of synaptic transmission, cholinergic blood vessel morphogenesis tube development angiogenesis vasculature development anatomical structure morphogenesis tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development protein localization to synapse macromolecule localization intracellular protein localization protein localization to cell junction primary metabolic process metabolic process lipid metabolic process multi-multicellular organism process reproductive process female pregnancy embryo implantation multi-organism reproductive process negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation defense response inflammatory response animal organ regeneration regeneration regulation of developmental process regulation of vasculature development regulation of multicellular organismal process regulation of anatomical structure morphogenesis regulation of multicellular organismal development negative regulation of blood vessel morphogenesis negative regulation of developmental process negative regulation of angiogenesis negative regulation of vasculature development regulation of angiogenesis negative regulation of multicellular organismal process positive regulation of cell population proliferation endothelial cell proliferation positive regulation of epithelial cell proliferation positive regulation of biological process regulation of endothelial cell proliferation positive regulation of endothelial cell proliferation regulation of epithelial cell proliferation epithelial cell proliferation positive regulation of cellular process	basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cell projection neuron projection plasma membrane bounded cell projection neuromuscular junction synapse cell junction protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex anchoring junction focal adhesion cell-substrate junction intracellular anatomical structure membrane-enclosed lumen lytic vacuole vacuolar lumen vacuole intracellular membrane-bounded organelle lysosomal lumen intracellular organelle lumen intracellular organelle organelle lumen cytoplasm lysosome Golgi apparatus endomembrane system Golgi lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A	IPR013106	Immunoglobulin V-set domain	Domain
A	IPR036055	LDL receptor-like superfamily	Homologous Superfamily
A	IPR003599	Immunoglobulin domain subtype	Domain
A	IPR002049	Laminin-type EGF domain	Domain
A	IPR056863	Laminin/attractin/netrin-like, EGF domain	Domain
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR001881	EGF-like calcium-binding domain	Domain
A	IPR023415	Low-density lipoprotein (LDL) receptor class A, conserved site	Conserved Site
A	IPR007110	Immunoglobulin-like domain	Domain
A	IPR000034	Laminin IV	Domain
A	IPR000082	SEA domain	Domain
A	IPR002172	Low-density lipoprotein (LDL) receptor class A repeat	Repeat
A	IPR003598	Immunoglobulin subtype 2	Domain
A	IPR051170	Neural and epithelial cell adhesion domain-containing protein	Family
A	IPR000742	EGF-like domain	Domain
A	IPR013098	Immunoglobulin I-set	Domain
A	IPR001791	Laminin G domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P98160	Schwartz-Jampel syndrome Silverman-Handmaker type dyssegmental dysplasia multiple epiphyseal dysplasia osteochondrodysplasia atrial fibrillation Craniofacial Abnormalities malignant mesothelioma Melnick-Needles syndrome osteogenesis imperfecta pilocytic astrocytoma AA amyloidosis Alzheimer disease spondyloepiphyseal dysplasia atypical teratoid rhabdoid tumor cystic fibrosis Schwartz-Jampel syndrome Silverman-Handmaker type dyssegmental dysplasia multiple epiphyseal dysplasia osteochondrodysplasia atrial fibrillation Craniofacial Abnormalities malignant mesothelioma Melnick-Needles syndrome osteogenesis imperfecta pilocytic astrocytoma AA amyloidosis Alzheimer disease spondyloepiphyseal dysplasia atypical teratoid rhabdoid tumor cystic fibrosis glioblastoma invasive ductal breast carcinoma malignant pancreatic neoplasm ovarian cancer polycystic ovary syndrome ABri amyloidosis arthrogryposis spondyloepiphyseal dysplasia tarda, X-linked Duchenne muscular dystrophy malignant ependymoma medulloblastoma pancreatic ductal adenocarcinoma psoriasis ADan amyloidosis sinusitis type 2 diabetes mellitus ductal breast carcinoma in situ gastric carcinoma intellectual disability

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.