3SU8

Crystal structure of a truncated intracellular domain of Plexin-B1 in complex with Rac1

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRas-like P-loop GTPases 8057406 3002022 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARase3su8A1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
B [auth X]Plexin_cytopl_1ste3su8X1 A: alpha bundlesX: GTPase activation domain, GAP (From Topology)H: GTPase activation domain, GAP (From Topology)T: GTPase activation domain, GAPF: Plexin_cytopl_1stECOD (1.6)
B [auth X]Plexin_cytopl_2nde3su8X2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Plexin_cytopl_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
B [auth X]1.10.506.10 Mainly Alpha Orthogonal Bundle GTPase Activation - p120GAP domain 1CATH (4.3.0)
B [auth X]3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00071Ras family (Ras)Ras familyIncludes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ...Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices [1].
Domain
B [auth X]PF20170Plexin cytoplasmic RhoGTPase-binding domain (Plexin_RBD)Plexin cytoplasmic RhoGTPase-binding domainThis entry represents the RhoGTPase-binding domain found in the cytoplasmic domain of plexins [1].Domain
B [auth X]PF08337Plexin cytoplasmic RasGAP domain (Plexin_cytopl)Plexin cytoplasmic RasGAP domainThis family features the C-terminal regions of various plexins (e.g. Swiss:P51805). Plexins are receptors for semaphorins, and plexin signalling is important in path finding and patterning of both neurons and developing blood vessels [1,2]. The cytop ...This family features the C-terminal regions of various plexins (e.g. Swiss:P51805). Plexins are receptors for semaphorins, and plexin signalling is important in path finding and patterning of both neurons and developing blood vessels [1,2]. The cytoplasmic region, which has been called a SEX domain in some members of this family [3], is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins [4]. This domain acts as a RasGAP domain [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ras-related C3 botulinum toxin substrate 1
B [auth X]Plexin-B1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR003578Small GTPase RhoFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR005225Small GTP-binding domainDomain
IPR001806Small GTPaseFamily
B [auth X]IPR002909IPT domainDomain
B [auth X]IPR041362Plexin, TIG domain 2Domain
B [auth X]IPR016201PSI domainDomain
B [auth X]IPR014756Immunoglobulin E-setHomologous Superfamily
B [auth X]IPR008936Rho GTPase activation proteinHomologous Superfamily
B [auth X]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B [auth X]IPR002165Plexin repeatRepeat
B [auth X]IPR041019Plexin, TIG domain 1Domain
B [auth X]IPR031148Plexin familyFamily
B [auth X]IPR046800Plexin, cytoplasmic RhoGTPase-binding domainDomain
B [auth X]IPR013783Immunoglobulin-like foldHomologous Superfamily
B [auth X]IPR013548Plexin, cytoplasmic RasGAP domainDomain
B [auth X]IPR036352Sema domain superfamilyHomologous Superfamily
B [auth X]IPR001627Sema domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
Pharos:  P63000
B [auth X]Pharos:  O43157