3TIW
Crystal structure of p97N in complex with the C-terminus of gp78
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CDC48_N | e3tiwA5 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: CDC48_N | ECOD (1.6) |
A | CDC48_2 | e3tiwA6 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: CDC48_2 | ECOD (1.6) |
C [auth B] | CDC48_N | e3tiwB5 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: CDC48_N | ECOD (1.6) |
C [auth B] | CDC48_2 | e3tiwB6 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: CDC48_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.40.20 | Mainly Beta | Beta Barrel | Barwin-like endoglucanases | CATH (4.3.0) | |
A | 3.10.330.10 | Alpha Beta | Roll | Vcp-like ATPase | Chain A, domain 2 | CATH (4.3.0) |
C [auth B] | 2.40.40.20 | Mainly Beta | Beta Barrel | Barwin-like endoglucanases | CATH (4.3.0) | |
C [auth B] | 3.10.330.10 | Alpha Beta | Roll | Vcp-like ATPase | Chain A, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF02359 | Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) | Cell division protein 48 (CDC48), N-terminal domain | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR003959 | ATPase, AAA-type, core | Domain |
A, C [auth B] | IPR005938 | AAA ATPase, CDC48 family | Family |
A, C [auth B] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
A, C [auth B] | IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily |
A, C [auth B] | IPR003338 | CDC48, N-terminal subdomain | Domain |
A, C [auth B] | IPR004201 | CDC48, domain 2 | Domain |
A, C [auth B] | IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily |
A, C [auth B] | IPR003593 | AAA+ ATPase domain | Domain |
A, C [auth B] | IPR041569 | AAA ATPase, AAA+ lid domain | Domain |
A, C [auth B] | IPR003960 | ATPase, AAA-type, conserved site | Conserved Site |
B [auth C], D | IPR003892 | Ubiquitin system component CUE | Domain |
B [auth C], D | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
B [auth C], D | IPR040675 | E3 ubiquitin-protein ligase AMFR, Ube2g2-binding region | Domain |
B [auth C], D | IPR001841 | Zinc finger, RING-type | Domain |