Structure and Allostery of the PKA RIIb Tetrameric Holoenzyme
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth F] | d3tnpf_ | Alpha and beta proteins (a+b) | Protein kinase-like (PK-like) | Protein kinase-like (PK-like) | Protein kinases, catalytic subunit | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
| A [auth C] | d3tnpc_ | Alpha and beta proteins (a+b) | Protein kinase-like (PK-like) | Protein kinase-like (PK-like) | Protein kinases, catalytic subunit | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C [auth F] | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8040503 | 3000066 | SCOP2B (2022-06-29) |
| A [auth C] | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8040503 | 3000066 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth F] | Flu_NP | e3tnpF2 | A: alpha bundles | X: Fusion glycoprotein F2 | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: Flu_NP | ECOD (develop294) |
| A [auth C] | Pkinase | e3tnpC2 | A: alpha bundles | X: DEATH domain | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: Pkinase | ECOD (develop294) |
| D [auth E] | PS-DH | e3tnpE2 | A: alpha bundles | X: PBZ domain | H: PBZ domain | T: PBZ domain | F: PS-DH | ECOD (develop294) |
| D [auth E] | DUF3228 | e3tnpE4 | A: alpha bundles | X: POZ domain | H: POZ domain | T: POZ domain | F: DUF3228 | ECOD (develop294) |
| B | TbpB_A | e3tnpB1 | A: alpha bundles | X: Ribosomal protein L31e-like | H: Reductive activator for corrinoid/iron-sulfur protein second domain | T: Reductive activator for corrinoid/iron-sulfur protein second domain | F: TbpB_A | ECOD (develop294) |
| B | CblD | e3tnpB4 | A: alpha bundles | X: DEATH domain | H: 40S ribosomal protein S13 N-terminal domain | T: 40S ribosomal protein S13 N-terminal domain | F: CblD | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C [auth F] | 1.10.510.10 | Mainly Alpha | Orthogonal Bundle | Transferase(Phosphotransferase) | domain 1 | CATH (4.3.0) |
| C [auth F] | 3.30.200.20 | Alpha Beta | 2-Layer Sandwich | Phosphorylase Kinase | domain 1 | CATH (4.3.0) |
| A [auth C] | 1.10.510.10 | Mainly Alpha | Orthogonal Bundle | Transferase(Phosphotransferase) | domain 1 | CATH (4.3.0) |
| A [auth C] | 3.30.200.20 | Alpha Beta | 2-Layer Sandwich | Phosphorylase Kinase | domain 1 | CATH (4.3.0) |
| D [auth E] | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
| B | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth C], C [auth F] | PF00069 | Protein kinase domain (Pkinase) | Protein kinase domain | Domain | |
| B, D [auth E] | PF00027 | Cyclic nucleotide-binding domain (cNMP_binding) | Cyclic nucleotide-binding domain | This domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| A [auth C], C [auth F] | SEP | Parent Component: SER :  AA0037 :  O-phospho-L-serine MOD:00046 |
| A [auth C], C [auth F] | TPO | Parent Component: THR :  AA0037 , AA0038 :  O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047 |














