3TQM | pdb_00003tqm

Structure of an ribosomal subunit interface protein from Coxiella burnetii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3tqmd_	Alpha and beta proteins (a+b)	Ribosome binding protein Y (YfiA homologue)	Ribosome binding protein Y (YfiA homologue)	automated matches	automated matches	(Coxiella burnetii ) [TaxId: 777 ],	SCOPe (2.08)
C	d3tqmc_	Alpha and beta proteins (a+b)	Ribosome binding protein Y (YfiA homologue)	Ribosome binding protein Y (YfiA homologue)	automated matches	automated matches	(Coxiella burnetii ) [TaxId: 777 ],	SCOPe (2.08)
B	d3tqmb_	Alpha and beta proteins (a+b)	Ribosome binding protein Y (YfiA homologue)	Ribosome binding protein Y (YfiA homologue)	automated matches	automated matches	(Coxiella burnetii ) [TaxId: 777 ],	SCOPe (2.08)
A	d3tqma_	Alpha and beta proteins (a+b)	Ribosome binding protein Y (YfiA homologue)	Ribosome binding protein Y (YfiA homologue)	automated matches	automated matches	(Coxiella burnetii ) [TaxId: 777 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	YfiA/CsgE-like	8076005	3000912	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YfiA/CsgE-like	8076005	3000912	SCOP2B (2022-06-29)
B	SCOP2 Family	YfiA-like	8076004	4003461	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	YfiA/CsgE-like	8076005	3000912	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	YfiA/CsgE-like	8076005	3000912	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Ion_trans_2	e3tqmD1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Ion_trans_2	ECOD (develop294)
C	Ion_trans_2	e3tqmC1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Ion_trans_2	ECOD (develop294)
B	Ion_trans_2	e3tqmB1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Ion_trans_2	ECOD (develop294)
A	RnaseA	e3tqmA1	A: alpha bundles	X: Cystatin-like	H: Cystatin/monellin	T: Cystatin/monellin	F: RnaseA	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.160.100	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	Ribosome hibernation promotion factor-like	CATH (4.3.0)
C	3.30.160.100	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	Ribosome hibernation promotion factor-like	CATH (4.3.0)
B	3.30.160.100	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	Ribosome hibernation promotion factor-like	CATH (4.3.0)
A	3.30.160.100	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	Ribosome hibernation promotion factor-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein (Ribosomal_S30AE)	Sigma 54 modulation protein / S30EA ribosomal protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Ribosome-associated factor Y	-	regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression biosynthetic process regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression biosynthetic process regulation of translation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process regulation of metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR003489	Ribosome hibernation promoting factor/RaiA	Family
A, B, C, D	IPR036567	Ribosome hibernation promotion factor-like	Homologous Superfamily
A, B, C, D	IPR050574	HPF/YfiA ribosome-associated	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.