Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with ATP


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ESCOP2 FamilytRNA(His) Guanylyltransferase (Thg1)-Like 8090899 4004771 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyNucleotide cyclase/DNA polymerase palm domain-like 8090900 3001272 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HRibosomal_L28e3wbzH1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
GRibosomal_L28e3wbzG1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
FRibosomal_L28e3wbzF1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
ERibosomal_L28e3wbzE1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
DRibosomal_L28e3wbzD1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
CRibosomal_L28e3wbzC1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
BRibosomal_L28e3wbzB1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
ARibosomal_L28e3wbzA1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF14413Thg1 C terminal domain (Thg1C)Thg1 C terminal domainThg1 polymerases contain an additional region of conservation C-terminal to the core palm domain that comprise of 5 helices and two strands [1]. This region has several well-conserved charged residues including a basic residue found towards the end ...Thg1 polymerases contain an additional region of conservation C-terminal to the core palm domain that comprise of 5 helices and two strands [1]. This region has several well-conserved charged residues including a basic residue found towards the end of the first helix of this unit might contribute to the Thg1-specific active site [1]. This C-terminal module of Thg1 is predicted to form a helical bundle that functions equivalently to the fingers of the other nucleic acid polymerases, probably in interacting with the template HtRNA [1].
Domain
A, B, C, D, E
PF04446tRNAHis guanylyltransferase (Thg1)tRNAHis guanylyltransferaseThe Thg1 protein from Saccharomyces cerevisiae is responsible for adding a GMP residue to the 5' end of tRNA His [1]. The catalytic domain Thg1 contains a RRM (ferredoxin) fold palm domain, just like the viral RNA-dependent RNA polymerases, reverse t ...The Thg1 protein from Saccharomyces cerevisiae is responsible for adding a GMP residue to the 5' end of tRNA His [1]. The catalytic domain Thg1 contains a RRM (ferredoxin) fold palm domain, just like the viral RNA-dependent RNA polymerases, reverse transcriptases, family A and B DNA polymerases, adenylyl cyclases, diguanylate cyclases (GGDEF domain) and the predicted polymerase of the CRISPR system [2]. Thg1 possesses an active site with three acidic residues that chelate Mg++ cations [2]. Thg1 catalyzes polymerization similar to the 5'-3' polymerases [2][3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Likely histidyl tRNA-specific guanylyltransferase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR007537tRNAHis guanylyltransferase Thg1Family
A, B, C, D, E
IPR025845Thg1 C-terminal domainDomain
A, B, C, D, E
IPR024956tRNAHis guanylyltransferase catalytic domainDomain
A, B, C, D, E
IPR038469tRNAHis guanylyltransferase Thg1 superfamilyHomologous Superfamily