3WQP
Crystal structure of Rubisco T289D mutant from Thermococcus kodakarensis
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | RuBisCO_large_N | e3wqpB1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
B | RuBisCO_large | e3wqpB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
C | RuBisCO_large_N | e3wqpC1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
C | RuBisCO_large | e3wqpC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
F | RuBisCO_large_N | e3wqpF1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
F | RuBisCO_large | e3wqpF2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
G | RuBisCO_large_N | e3wqpG1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
G | RuBisCO_large | e3wqpG2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
H | RuBisCO_large_N | e3wqpH2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
H | RuBisCO_large | e3wqpH1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
I | RuBisCO_large_N | e3wqpI2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
I | RuBisCO_large | e3wqpI1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
J | RuBisCO_large_N | e3wqpJ1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
J | RuBisCO_large | e3wqpJ2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
A | RuBisCO_large_N | e3wqpA1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
A | RuBisCO_large | e3wqpA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
D | RuBisCO_large_N | e3wqpD1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
D | RuBisCO_large | e3wqpD2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
E | RuBisCO_large_N | e3wqpE1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
E | RuBisCO_large | e3wqpE2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain | |
PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036376 | Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily | Homologous Superfamily | |
IPR000685 | Ribulose bisphosphate carboxylase, large subunit, C-terminal | Domain | |
IPR033966 | RuBisCO | Family | |
IPR036422 | RuBisCO large subunit, N-terminal domain superfamily | Homologous Superfamily | |
IPR017712 | Ribulose bisphosphate carboxylase, type III | Family | |
IPR017443 | Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal | Domain |