3WWK | pdb_00003wwk

Crystal structure of CLEC-2 in complex with rhodocytin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L [auth F]	d3wwkf_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
K [auth L]	d3wwkl_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F [auth I]	d3wwki_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A [auth C]	d3wwkc_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
I [auth J]	d3wwkj_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Calloselasma rhodostoma ) [TaxId: 8717 ],	SCOPe (2.08)
G	d3wwkg_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Calloselasma rhodostoma ) [TaxId: 8717 ],	SCOPe (2.08)
D	d3wwkd_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Calloselasma rhodostoma ) [TaxId: 8717 ],	SCOPe (2.08)
B [auth A]	d3wwka_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Calloselasma rhodostoma ) [TaxId: 8717 ],	SCOPe (2.08)
J [auth K]	d3wwkk_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Calloselasma rhodostoma ) [TaxId: 8717 ],	SCOPe (2.08)
H	d3wwkh_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Calloselasma rhodostoma ) [TaxId: 8717 ],	SCOPe (2.08)
E	d3wwke_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	(Calloselasma rhodostoma ) [TaxId: 8717 ],	SCOPe (2.08)
C [auth B]	d3wwkb_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Calloselasma rhodostoma ) [TaxId: 8717 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth F]	SCOP2B Superfamily	C-type lectin-like	8065442	3001261	SCOP2B (2022-06-29)
K [auth L]	SCOP2B Superfamily	C-type lectin-like	8065442	3001261	SCOP2B (2022-06-29)
F [auth I]	SCOP2B Superfamily	C-type lectin-like	8065442	3001261	SCOP2B (2022-06-29)
A [auth C]	SCOP2B Superfamily	C-type lectin-like	8065442	3001261	SCOP2B (2022-06-29)
I [auth J]	SCOP2B Superfamily	C-type lectin-like	8065488	3001261	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	C-type lectin-like	8065488	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8065488	3001261	SCOP2B (2022-06-29)
B [auth A]	SCOP2 Family	C-type lectin domain	8065487	4002453	SCOP2 (2022-06-29)
B [auth A]	SCOP2 Superfamily	C-type lectin-like	8065488	3001261	SCOP2 (2022-06-29)
J [auth K]	SCOP2B Superfamily	C-type lectin-like	8065460	3001261	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	C-type lectin-like	8065460	3001261	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	C-type lectin-like	8065460	3001261	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	C-type lectin-like	8065460	3001261	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth F]	Lectin_C_1	e3wwkF1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C_1	ECOD (1.6)
K [auth L]	Lectin_C_1	e3wwkL1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C_1	ECOD (1.6)
F [auth I]	Lectin_C_1	e3wwkI1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C_1	ECOD (1.6)
A [auth C]	Lectin_C_1	e3wwkC1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C_1	ECOD (1.6)
I [auth J]	Lectin_C	e3wwkJ1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)
G	Lectin_C	e3wwkG1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)
D	Lectin_C	e3wwkD1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)
B [auth A]	Lectin_C	e3wwkA1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)
J [auth K]	Lectin_C	e3wwkK1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)
H	Lectin_C	e3wwkH1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)
E	Lectin_C	e3wwkE1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)
C [auth B]	Lectin_C	e3wwkB1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L [auth F]	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
K [auth L]	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
F [auth I]	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
A [auth C]	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
I [auth J]	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
G	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
D	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
B [auth A]	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
J [auth K]	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
H	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
E	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
C [auth B]	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], F [auth I], K [auth L], L [auth F]	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain
B [auth A], D, G, I [auth J]	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain
C [auth B], E, H, J [auth K]	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], F [auth I], K [auth L], L [auth F]	C-type lectin domain family 1 member B	binding carbohydrate binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cellular process signal transduction cell communication developmental process cellular developmental process hemopoiesis platelet morphogenesis cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cellular process signal transduction cell communication developmental process cellular developmental process hemopoiesis platelet morphogenesis cell development cell morphogenesis anatomical structure morphogenesis myeloid cell differentiation cell differentiation platelet formation anatomical structure development anatomical structure formation involved in morphogenesis defense response response to stress	cell surface cellular anatomical structure cell periphery plasma membrane membrane
B [auth A], D, G, I [auth J]	Snaclec rhodocytin subunit alpha	cation binding ion binding binding metal ion binding small molecule binding toxin activity	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling regulation of binding regulation of signaling receptor activity biological regulation regulation of signal transduction cell communication regulation of protein binding regulation of molecular function regulation of receptor binding regulation of cytokine activity cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling regulation of binding regulation of signaling receptor activity biological regulation regulation of signal transduction cell communication regulation of protein binding regulation of molecular function regulation of receptor binding regulation of cytokine activity regulation of response to stimulus regulation of cell communication cellular process signal transduction	cellular anatomical structure extracellular region
C [auth B], E, H, J [auth K]	Snaclec rhodocytin subunit beta	cation binding ion binding binding metal ion binding small molecule binding toxin activity	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], F [auth I], K [auth L], L [auth F]	IPR016187	C-type lectin fold	Homologous Superfamily
A [auth C], F [auth I], K [auth L], L [auth F]	IPR001304	C-type lectin-like	Domain
A [auth C], F [auth I], K [auth L], L [auth F]	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A [auth C], F [auth I], K [auth L], L [auth F]	IPR033992	Natural killer cell receptor-like, C-type lectin-like domain	Domain
A [auth C], F [auth I], K [auth L], L [auth F]	IPR052309	C-type Lectin Domain Family 1	Family
B [auth A], D, G, I [auth J]	IPR001304	C-type lectin-like	Domain
B [auth A], D, G, I [auth J]	IPR018378	C-type lectin, conserved site	Conserved Site
B [auth A], D, G, I [auth J]	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
B [auth A], D, G, I [auth J]	IPR050111	C-type lectin and snaclec domain-containing protein	Family
B [auth A], D, G, I [auth J]	IPR016187	C-type lectin fold	Homologous Superfamily
C [auth B], E, H, J [auth K]	IPR001304	C-type lectin-like	Domain
C [auth B], E, H, J [auth K]	IPR018378	C-type lectin, conserved site	Conserved Site
C [auth B], E, H, J [auth K]	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
C [auth B], E, H, J [auth K]	IPR050111	C-type lectin and snaclec domain-containing protein	Family
C [auth B], E, H, J [auth K]	IPR016187	C-type lectin fold	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth C], F [auth I], K [auth L], L [auth F]	Pharos: Q9P126	hepatocellular carcinoma exocrine pancreatic carcinoma pancreatic ductal adenocarcinoma gastric cancer malignant pancreatic neoplasm spondyloarthropathy gastric carcinoma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.