3WYF | pdb_00003wyf

Crystal structure of Xpo1p-Yrb2p-Gsp1p-GTP complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Cys_Met_Meta_PP	e3wyfF1	A: alpha bundles	X: Cytidine deaminase-like	H: Cytidine deaminase-like	T: Cytidine deaminase-like	F: Cys_Met_Meta_PP	ECOD (develop294)
C	Cys_Met_Meta_PP	e3wyfC1	A: alpha bundles	X: Cytidine deaminase-like	H: Cytidine deaminase-like	T: Cytidine deaminase-like	F: Cys_Met_Meta_PP	ECOD (develop294)
E	Cys_Met_Meta_PP	e3wyfE1	A: alpha bundles	X: Cytidine deaminase-like	H: Cytidine deaminase-like	T: Cytidine deaminase-like	F: Cys_Met_Meta_PP	ECOD (develop294)
B	Cys_Met_Meta_PP	e3wyfB1	A: alpha bundles	X: Cytidine deaminase-like	H: Cytidine deaminase-like	T: Cytidine deaminase-like	F: Cys_Met_Meta_PP	ECOD (develop294)
D	Cys_Met_Meta_PP	e3wyfD1	A: alpha bundles	X: Cytidine deaminase-like	H: Cytidine deaminase-like	T: Cytidine deaminase-like	F: Cys_Met_Meta_PP	ECOD (develop294)
A	Cys_Met_Meta_PP	e3wyfA1	A: alpha bundles	X: Cytidine deaminase-like	H: Cytidine deaminase-like	T: Cytidine deaminase-like	F: Cys_Met_Meta_PP	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (4.3.0)
E	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
B	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
D	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, F	PF08389	Exportin 1-like protein (Xpo1)	Exportin 1-like protein	-	Repeat
C, F	PF18784	CRM1 / Exportin repeat 2 (CRM1_repeat_2)	CRM1 / Exportin repeat 2	-	Repeat
C, F	PF18777	Chromosome region maintenance or exportin repeat (CRM1_repeat)	Chromosome region maintenance or exportin repeat	-	Repeat
C, F	PF18787	CRM1 / Exportin repeat 3 (CRM1_repeat_3)	CRM1 / Exportin repeat 3	-	Repeat
C, F	PF03810	Importin-beta N-terminal domain (IBN_N)	Importin-beta N-terminal domain	-	Repeat
C, F	PF08767	CRM1 C terminal (CRM1_C)	CRM1 C terminal	-	Repeat
B, E	PF00638	RanBP1 domain (Ran_BP1)	RanBP1 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F	Exportin-1	small GTPase binding protein binding binding enzyme binding GTPase binding RNA binding snRNA binding nucleic acid binding U1 snRNA binding U6 snRNA binding U4 snRNA binding nucleocytoplasmic carrier activity nuclear export signal receptor activity molecular carrier activity small GTPase binding protein binding binding enzyme binding GTPase binding RNA binding snRNA binding nucleic acid binding U1 snRNA binding U6 snRNA binding U4 snRNA binding nucleocytoplasmic carrier activity nuclear export signal receptor activity molecular carrier activity U5 snRNA binding nuclear import signal receptor activity U2 snRNA binding	cellular localization RNA transport nitrogen compound transport nucleocytoplasmic transport transport nuclear transport nucleic acid transport intracellular transport tRNA export from nucleus establishment of localization RNA export from nucleus localization tRNA re-export from nucleus tRNA transport establishment of RNA localization cellular localization RNA transport nitrogen compound transport nucleocytoplasmic transport transport nuclear transport nucleic acid transport intracellular transport tRNA export from nucleus establishment of localization RNA export from nucleus localization tRNA re-export from nucleus tRNA transport establishment of RNA localization establishment of localization in cell macromolecule localization cellular process RNA localization nuclear export nucleobase-containing compound transport establishment of organelle localization ribonucleoprotein complex biogenesis ribosomal subunit export from nucleus cellular component biogenesis ribosome biogenesis ribosomal small subunit export from nucleus organelle localization cellular component organization or biogenesis ribosome localization establishment of protein localization protein export from nucleus protein transport intracellular protein localization intracellular protein transport protein localization to kinetochore protein localization to chromosome protein localization to chromosome, centromeric region protein localization to condensed chromosome protein localization to organelle mRNA transport mRNA export from nucleus gene expression macromolecule biosynthetic process biosynthetic process metabolic process macromolecule metabolic process ribosomal large subunit export from nucleus	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome cellular anatomical structure intracellular anatomical structure cytoplasm intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome microtubule organizing center cytoskeleton spindle pole body microtubule cytoskeleton perinuclear region of cytoplasm membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B, E	Ran-specific GTPase-activating protein 2	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity	establishment of protein localization cellular localization NLS-bearing protein import into nucleus nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization localization import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell macromolecule localization establishment of protein localization cellular localization NLS-bearing protein import into nucleus nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization localization import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell macromolecule localization protein localization to organelle protein import into nucleus cellular process intracellular protein localization intracellular protein transport establishment of organelle localization ribonucleoprotein complex biogenesis ribosomal subunit export from nucleus cellular component biogenesis ribosome biogenesis ribosomal small subunit export from nucleus organelle localization cellular component organization or biogenesis nuclear export ribosome localization protein export from nucleus	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
A, D	Gsp1p	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F	IPR041123	Chromosome region maintenance repeat	Repeat
C, F	IPR016024	Armadillo-type fold	Homologous Superfamily
C, F	IPR041235	Exportin-1, repeat 2	Repeat
C, F	IPR001494	Importin-beta, N-terminal domain	Domain
C, F	IPR011989	Armadillo-like helical	Homologous Superfamily
C, F	IPR045065	Exportin-1/5	Family
C, F	IPR013598	Exportin-1/Importin-beta-like	Domain
C, F	IPR014877	Exportin-1, C-terminal	Domain
C, F	IPR040485	Exportin-1, repeat 3	Repeat
B, E	IPR011993	PH-like domain superfamily	Homologous Superfamily
B, E	IPR000156	Ran binding domain	Domain
B, E	IPR045255	Ran binding protein RanBP1-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.