Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyAcid proteases 8066379 3001059 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAcid proteases 8066379 3001059 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AAsp_C_1e3zkmA2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Asp_C_1ECOD (1.6)
AAsp_Ne3zkmA3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Asp_NECOD (1.6)
BAsp_C_1e3zkmB2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Asp_C_1ECOD (1.6)
BAsp_Ne3zkmB3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Asp_NECOD (1.6)
CV-set_8e3zkmC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
CC1-set_1e3zkmC2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)
E [auth H]V-set_8e3zkmH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
E [auth H]C1-set_1e3zkmH2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)
F [auth L]C1-set_4e3zkmL2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
F [auth L]V-sete3zkmL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
DC1-set_4e3zkmD2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
DV-sete3zkmD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.70.10 Mainly Beta Beta Barrel Cathepsin D, subunit A domain 1CATH (4.3.0)
B2.40.70.10 Mainly Beta Beta Barrel Cathepsin D, subunit A domain 1CATH (4.3.0)
C2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
E [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
F [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
C,
E [auth H]
FAB-GAMMA-2A_KAPPA VH-CH1 Mus musculus (house mouse) IGHV2-9*02, IGHJ4*01, IGHG2A*01, IGHG2A*02 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-2A_KAPPA IMGT (202443-0)
D,
F [auth L]
FAB-GAMMA-2A_KAPPA V-KAPPA Mus musculus (house mouse) IGKV3-10*01, IGKJ1*01 V-DOMAIN V-KAPPA IG FAB-GAMMA-2A_KAPPA IMGT (202443-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C,
E [auth H]
Heavy ChainIGHV2 -beta-secretase 2SAbDab (2024-11-01)
D,
F [auth L]
Light ChainIGKV3 Kappabeta-secretase 2SAbDab (2024-11-01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00026Eukaryotic aspartyl protease (Asp)Eukaryotic aspartyl protease- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
BETA-SECRETASE 2
C,
E [auth H]
FAB HEAVY CHAIN---
D,
F [auth L]
FAB LIGHT CHAIN---

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
C,
E [auth H]
PCA Parent Component: GLN

RESIDAA0031

PSI-MOD :  2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420