3ZX8
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Tombusviridae-like VP | 8071987 | 4003478 | SCOP2 (2022-06-29) |
A | SCOP2 Family | CNV-CP protruding P-domain-like | 8089976 | 4007693 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Positive stranded ssRNA viruses-like | 8071988 | 3000918 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | CNV-CP protruding P-domain-like | 8089977 | 3002408 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8071988 | 3000918 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | CNV-CP protruding P-domain-like | 8089977 | 3002408 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | CNV-CP protruding P-domain-like | 8089977 | 3002408 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8071988 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Viral_coat | e3zx8A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Viral_coat | ECOD (1.6) |
B | Viral_coat | e3zx8B1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Viral_coat | ECOD (1.6) |
C | Viral_coat | e3zx8C1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Viral_coat | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00729 | Viral coat protein (S domain) (Viral_coat) | Viral coat protein (S domain) | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR000937 | Icosahedral viral capsid protein, S domain | Domain |