4A0C
Structure of the CAND1-CUL4B-RBX1 complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ARM repeat-like | 8042782 | 3000116 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ARM repeat-like | 8042782 | 3000116 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Winged helix DNA-binding domain | 8088858 | 3000034 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cullin repeat-like | 8084780 | 3000059 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Cullin repeat-like | 8084780 | 3000059 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Winged helix DNA-binding domain | 8088858 | 3000034 | SCOP2B (2022-06-29) |
D | SCOP2 Family | RING finger domain, C3HC4 | 8082716 | 4000374 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | RING/U-box like | 8082717 | 3000160 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | RING/U-box like | 8082717 | 3000160 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IBN_N | e4a0cA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: IBN_N | ECOD (1.6) |
B | IBN_N | e4a0cB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: IBN_N | ECOD (1.6) |
C | Cullin_Nedd8 | e4a0cC3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_Nedd8 | ECOD (1.6) |
C | Cullin_4th | e4a0cC5 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_4th | ECOD (1.6) |
C | Cullin_1st | e4a0cC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_1st | ECOD (1.6) |
C | Cullin_2nd | e4a0cC4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_2nd | ECOD (1.6) |
C | Cullin_3rd | e4a0cC2 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: Cullin_3rd | ECOD (1.6) |
E | Cullin_Nedd8 | e4a0cE10 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_Nedd8 | ECOD (1.6) |
E | Cullin_4th | e4a0cE9 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_4th | ECOD (1.6) |
E | Cullin_1st | e4a0cE6 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_1st | ECOD (1.6) |
E | Cullin_2nd | e4a0cE8 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_2nd | ECOD (1.6) |
E | Cullin_3rd | e4a0cE7 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: Cullin_3rd | ECOD (1.6) |
D | zf-rbx1 | e4a0cD1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-rbx1 | ECOD (1.6) |
F | zf-rbx1 | e4a0cF1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-rbx1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
B | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
D | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
F | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08623 | TATA-binding protein interacting (TIP20) (TIP120) | TATA-binding protein interacting (TIP20) | - | Repeat | |
PF13513 | HEAT-like repeat (HEAT_EZ) | HEAT-like repeat | - | Repeat | |
PF00888 | Cullin family (Cullin) | Cullin family | - | Repeat | |
PF10557 | Cullin protein neddylation domain (Cullin_Nedd8) | Cullin protein neddylation domain | This is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cu ... | Domain | |
PF12678 | RING-H2 zinc finger domain (zf-rbx1) | RING-H2 zinc finger domain | There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR011989 | Armadillo-like helical | Homologous Superfamily | |
IPR039852 | Cullin-associated NEDD8-dissociated protein 1/2 | Family | |
IPR013932 | TATA-binding protein interacting (TIP20) | Domain | |
IPR045093 | Cullin | Family | |
IPR019559 | Cullin protein, neddylation domain | Domain | |
IPR016158 | Cullin homology domain | Domain | |
IPR016157 | Cullin, conserved site | Conserved Site | |
IPR001373 | Cullin, N-terminal | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR036317 | Cullin homology domain superfamily | Homologous Superfamily | |
IPR016159 | Cullin repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR051031 | RING-box E3 Ubiquitin Ligase | Family | |
IPR024766 | Zinc finger, RING-H2-type | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR001841 | Zinc finger, RING-type | Domain |