4A1G | pdb_00004a1g

The crystal structure of the human Bub1 TPR domain in complex with the KI motif of Knl1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	SmpA_OmlA	e4a1gD1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: SmpA_OmlA	ECOD (v294.1)
C	SmpA_OmlA	e4a1gC1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: SmpA_OmlA	ECOD (v294.1)
B	SmpA_OmlA	e4a1gB1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: SmpA_OmlA	ECOD (v294.1)
A	Ras	e4a1gA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Ras	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.25.40.430	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
C	1.25.40.430	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
B	1.25.40.430	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
A	1.25.40.430	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF08311	Mad3/BUB1 homology region 1 (Mad3_BUB1_I)	Mad3/BUB1 homology region 1	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H	PROTEIN CASC5	cytoskeletal protein binding microtubule binding protein binding binding tubulin binding	meiotic chromosome segregation sexual reproduction homologous chromosome orientation in meiotic metaphase I reproductive process meiotic cell cycle process metaphase chromosome alignment cellular component organization localization meiotic metaphase I homologous chromosome alignment meiosis I chromosome localization organelle localization meiotic nuclear division cell cycle meiotic chromosome segregation sexual reproduction homologous chromosome orientation in meiotic metaphase I reproductive process meiotic cell cycle process metaphase chromosome alignment cellular component organization localization meiotic metaphase I homologous chromosome alignment meiosis I chromosome localization organelle localization meiotic nuclear division cell cycle cellular component organization or biogenesis chromosome segregation cell cycle process meiotic cell cycle organelle fission nuclear division organelle organization meiosis I cell cycle process nuclear chromosome segregation meiotic metaphase chromosome alignment cellular process homologous chromosome segregation cellular response to stimulus regulation of meiosis I spindle assembly checkpoint positive regulation of signal transduction response to stimulus regulation of reproductive process positive regulation of cell cycle checkpoint spindle checkpoint signaling regulation of signal transduction regulation of meiosis I intracellular signal transduction regulation of cell cycle checkpoint regulation of metaphase/anaphase transition of meiotic cell cycle meiotic spindle assembly checkpoint signaling negative regulation of cell cycle phase transition regulation of meiotic cell cycle sister chromatid segregation positive regulation of intracellular signal transduction negative regulation of meiotic chromosome separation regulation of response to stimulus negative regulation of meiotic cell cycle phase transition negative regulation of meiotic cell cycle regulation of chromosome segregation regulation of cellular component organization spindle assembly checkpoint signaling negative regulation of metaphase/anaphase transition of meiotic cell cycle positive regulation of cell cycle process regulation of cell cycle negative regulation of chromosome separation negative regulation of meiotic nuclear division positive regulation of cellular process positive regulation of reproductive process positive regulation of spindle checkpoint regulation of signaling chromosome organization positive regulation of cell cycle regulation of meiotic nuclear division cell cycle checkpoint signaling meiotic cell cycle phase transition negative regulation of chromosome segregation chromosome separation negative regulation of nuclear division negative regulation of reproductive process negative regulation of metaphase/anaphase transition of cell cycle regulation of cell communication positive regulation of cell communication regulation of cellular process regulation of cell cycle phase transition negative regulation of biological process negative regulation of cell cycle cell communication signal transduction regulation of biological process negative regulation of cellular component organization regulation of cell cycle process regulation of spindle checkpoint regulation of chromosome organization regulation of organelle organization positive regulation of meiosis I spindle assembly checkpoint regulation of chromosome separation meiotic spindle checkpoint signaling regulation of metaphase/anaphase transition of cell cycle signaling positive regulation of biological process regulation of meiotic chromosome separation cell cycle phase transition meiosis I spindle assembly checkpoint signaling positive regulation of response to stimulus regulation of intracellular signal transduction negative regulation of cellular process negative regulation of meiosis I metaphase/anaphase transition of meiotic cell cycle meiotic chromosome separation regulation of meiotic cell cycle phase transition biological regulation negative regulation of cell cycle process meiotic cell cycle checkpoint signaling negative regulation of organelle organization regulation of sister chromatid segregation regulation of nuclear division metaphase/anaphase transition of cell cycle positive regulation of signaling attachment of spindle microtubules to kinetochore protein localization to kinetochore protein localization to chromosome protein localization to chromosome, centromeric region protein localization to condensed chromosome protein localization to organelle macromolecule localization intracellular protein localization cell division regulation of mitotic nuclear division negative regulation of mitotic cell cycle negative regulation of mitotic sister chromatid segregation negative regulation of chromosome organization mitotic spindle checkpoint signaling mitotic sister chromatid separation negative regulation of sister chromatid segregation mitotic spindle assembly checkpoint signaling regulation of mitotic cell cycle phase transition regulation of mitotic sister chromatid segregation mitotic cell cycle process negative regulation of mitotic nuclear division regulation of mitotic sister chromatid separation regulation of mitotic spindle checkpoint regulation of mitotic cell cycle spindle assembly checkpoint regulation of mitotic metaphase/anaphase transition mitotic cell cycle regulation of mitotic cell cycle mitotic sister chromatid segregation negative regulation of mitotic metaphase/anaphase transition mitotic nuclear division negative regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling negative regulation of mitotic sister chromatid separation metaphase/anaphase transition of mitotic cell cycle mitotic cell cycle phase transition spermatid development spermatid differentiation cellular developmental process spermatogenesis cellular component assembly involved in morphogenesis cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation cellular component biogenesis vesicle organization cellular anatomical entity morphogenesis cellular component assembly cell differentiation anatomical structure development endomembrane system organization developmental process organelle assembly secretory granule organization multicellular organismal reproductive process male gamete generation anatomical structure morphogenesis anatomical structure formation involved in morphogenesis germ cell development acrosome assembly	intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome cytoplasm intracellular anatomical structure intracellular membraneless organelle chromosome chromosomal region kinetochore intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen nuclear lumen protein-containing complex outer kinetochore acrosomal vesicle intracellular vesicle endomembrane system cytoplasmic vesicle secretory granule secretory vesicle vesicle Knl1/Spc105 complex
A, B, C, D	MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1	catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity protein serine kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity protein serine kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity histone modifying activity histone H2A kinase activity histone kinase activity	regulation of maintenance of mitotic sister chromatid cohesion positive regulation of organelle organization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization mitotic sister chromatid cohesion positive regulation of biological process maintenance of sister chromatid cohesion regulation of maintenance of mitotic sister chromatid cohesion, centromeric cellular component organization centromeric sister chromatid cohesion maintenance of mitotic sister chromatid cohesion regulation of centromeric sister chromatid cohesion positive regulation of cell cycle process regulation of maintenance of mitotic sister chromatid cohesion positive regulation of organelle organization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization mitotic sister chromatid cohesion positive regulation of biological process maintenance of sister chromatid cohesion regulation of maintenance of mitotic sister chromatid cohesion, centromeric cellular component organization centromeric sister chromatid cohesion maintenance of mitotic sister chromatid cohesion regulation of centromeric sister chromatid cohesion positive regulation of cell cycle process cellular component organization or biogenesis cell cycle regulation of cell cycle positive regulation of cellular process cell cycle process regulation of biological process regulation of cell cycle process biological regulation chromosome organization sister chromatid cohesion regulation of chromosome organization positive regulation of maintenance of sister chromatid cohesion positive regulation of maintenance of mitotic sister chromatid cohesion positive regulation of sister chromatid cohesion regulation of organelle organization positive regulation of cell cycle positive regulation of chromosome organization regulation of maintenance of sister chromatid cohesion positive regulation of maintenance of mitotic sister chromatid cohesion, centromeric organelle organization maintenance of mitotic sister chromatid cohesion, centromeric regulation of sister chromatid cohesion mitotic sister chromatid cohesion, centromeric cellular process meiotic sister chromatid cohesion, centromeric meiotic sister chromatid cohesion cell division chromosome segregation cellular response to stimulus regulation of cell cycle phase transition response to stimulus negative regulation of biological process spindle checkpoint signaling negative regulation of cell cycle regulation of mitotic nuclear division intracellular signal transduction negative regulation of mitotic cell cycle cell communication negative regulation of mitotic sister chromatid segregation negative regulation of chromosome organization negative regulation of cell cycle phase transition mitotic spindle checkpoint signaling signal transduction mitotic sister chromatid separation negative regulation of sister chromatid segregation mitotic spindle assembly checkpoint signaling negative regulation of cellular component organization sister chromatid segregation regulation of mitotic cell cycle phase transition regulation of mitotic sister chromatid segregation mitotic cell cycle process regulation of chromosome separation negative regulation of mitotic nuclear division regulation of chromosome segregation regulation of mitotic sister chromatid separation regulation of metaphase/anaphase transition of cell cycle signaling spindle assembly checkpoint signaling cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle regulation of mitotic cell cycle negative regulation of cellular process mitotic sister chromatid segregation negative regulation of mitotic metaphase/anaphase transition negative regulation of chromosome separation mitotic nuclear division negative regulation of mitotic cell cycle phase transition organelle fission negative regulation of cell cycle process cell cycle checkpoint signaling mitotic cell cycle checkpoint signaling nuclear division negative regulation of chromosome segregation negative regulation of nuclear division negative regulation of organelle organization chromosome separation regulation of sister chromatid segregation negative regulation of mitotic sister chromatid separation regulation of nuclear division negative regulation of metaphase/anaphase transition of cell cycle nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition apoptotic process cell death programmed cell death	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex intracellular membraneless organelle chromosome chromosomal region kinetochore membraneless organelle chromosome, centromeric region outer kinetochore condensed chromosome, centromeric region supramolecular complex condensed chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, G, H	IPR037388	Kinetochore scaffold 1	Family
E, F, G, H	IPR043651	KNL1 MELT repeat	Repeat
E, F, G, H	IPR040850	Knl1, C-terminal RWD domain	Domain
A, B, C, D	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B, C, D	IPR000719	Protein kinase domain	Domain
A, B, C, D	IPR015661	Mitotic spindle checkpoint protein Bub1/Mad3	Family
A, B, C, D	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR013212	Mad3/Bub1 homology region 1	Domain
A, B, C, D	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E, F, G, H	Pharos: Q8NG31	microcephaly 4, primary, autosomal recessive autosomal recessive primary microcephaly microcephaly osteosarcoma pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor psoriasis adrenal cortex carcinoma ductal breast carcinoma in situ intellectual disability malignant ependymoma medulloblastoma nasopharyngeal carcinoma ovarian cancer pilocytic astrocytoma microcephaly 4, primary, autosomal recessive autosomal recessive primary microcephaly microcephaly osteosarcoma pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor psoriasis adrenal cortex carcinoma ductal breast carcinoma in situ intellectual disability malignant ependymoma medulloblastoma nasopharyngeal carcinoma ovarian cancer pilocytic astrocytoma Prostate cancer, familial atopic eczema breast cancer endometriosis invasive ductal breast carcinoma malignant glioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma prostate carcinoma atypical teratoid rhabdoid tumor breast carcinoma glioblastoma large cell medulloblastoma malignant pancreatic neoplasm
A, B, C, D	Pharos: O43683	mosaic variegated aneuploidy syndrome 1 colorectal cancer malignant glioma malignant pancreatic neoplasm osteosarcoma adrenal cortex carcinoma pancreatic intraductal papillary-mucinous neoplasm atypical teratoid rhabdoid tumor Sjogren syndrome endometriosis hepatocellular carcinoma large cell medulloblastoma malignant colon neoplasm malignant mesothelioma medulloblastoma mosaic variegated aneuploidy syndrome 1 colorectal cancer malignant glioma malignant pancreatic neoplasm osteosarcoma adrenal cortex carcinoma pancreatic intraductal papillary-mucinous neoplasm atypical teratoid rhabdoid tumor Sjogren syndrome endometriosis hepatocellular carcinoma large cell medulloblastoma malignant colon neoplasm malignant mesothelioma medulloblastoma nasopharyngeal carcinoma ovarian cancer alopecia areata primitive neuroectodermal tumor breast cancer ulcerative colitis Crohn disease exocrine pancreatic carcinoma IgA glomerulonephritis lung adenocarcinoma malignant ependymoma Malignant neoplasm of pancreas mosaic variegated aneuploidy syndrome non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma atopic eczema psoriasis breast carcinoma ductal breast carcinoma in situ glioblastoma invasive ductal breast carcinoma lung cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.