4AHM

V113I - Angiogenin mutants and amyotrophic lateral sclerosis - a biochemical and biological analysis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4ahma_	Alpha and beta proteins (a+b)	RNase A-like	RNase A-like	Ribonuclease A-like	Angiogenin	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RNase A-like	8040055	3001918	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RnaseA	e4ahmA1	A: a+b complex topology	X: RNase A-like	H: RNase A-like (From Topology)	T: RNase A-like	F: RnaseA	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.130.10	Alpha Beta	Roll	P-30 Protein	Ribonuclease A-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00074	Pancreatic ribonuclease (RnaseA)	Pancreatic ribonuclease	Ribonucleases. Members include pancreatic RNAase A and angiogenins. Structure is an alpha+beta fold -- long curved beta sheet and three helices.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	ANGIOGENIN	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding cation binding transition metal ion binding copper ion binding ion binding metal ion binding small molecule binding DNA binding endonuclease activity nuclease activity RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding cation binding transition metal ion binding copper ion binding ion binding metal ion binding small molecule binding DNA binding endonuclease activity nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity hydrolase activity catalytic activity protein binding signaling receptor binding identical protein binding protein homodimerization activity protein dimerization activity cytoskeletal protein binding actin binding peptide binding heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding	catabolic process RNA metabolic process primary metabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process tRNA metabolic process nucleobase-containing compound metabolic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process tRNA decay RNA catabolic process catabolic process RNA metabolic process primary metabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process tRNA metabolic process nucleobase-containing compound metabolic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process tRNA decay RNA catabolic process developmental process placenta development animal organ development anatomical structure development regulation of cellular process regulation of protein modification process positive regulation of phosphorylation regulation of catalytic activity regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of biological process regulation of transferase activity positive regulation of phosphate metabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of molecular function positive regulation of protein modification process regulation of phosphate metabolic process phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process protein metabolic process activation of protein kinase B activity positive regulation of protein kinase activity phosphorus metabolic process protein modification process positive regulation of protein phosphorylation positive regulation of cellular process regulation of biological process protein phosphorylation positive regulation of transferase activity positive regulation of phosphorus metabolic process phosphorylation regulation of protein metabolic process biological regulation positive regulation of catalytic activity regulation of protein kinase activity regulation of macromolecule metabolic process regulation of molecular function positive regulation of kinase activity regulation of kinase activity activation of protein kinase activity macromolecule modification regulation of phosphorylation regulation of phosphorus metabolic process regulation of metabolic process humoral immune response biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response immune response antibacterial humoral response defense response to symbiont response to external stimulus antimicrobial humoral response response to biotic stimulus defense response to bacterium defense response to other organism response to stress immune system process response to bacterium response to external biotic stimulus innate immune response cell migration cell motility sexual reproduction cellular developmental process reproductive process multicellular organismal reproductive process oogenesis cell development cellular process involved in reproduction in multicellular organism developmental maturation developmental process involved in reproduction female gamete generation gamete generation oocyte development anatomical structure maturation cell differentiation germ cell development oocyte maturation oocyte differentiation cell maturation multicellular organismal process gonad development reproductive system development female gonad development sex differentiation female sex differentiation development of primary female sexual characteristics multicellular organism development development of primary sexual characteristics reproductive structure development ovarian follicle development system development nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process rRNA transcription rRNA metabolic process response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus response to hormone response to endogenous stimulus response to chemical negative regulation of biological process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of metabolic process translation regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development anatomical structure morphogenesis tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development protein polymerization actin polymerization or depolymerization actin filament polymerization actin cytoskeleton organization protein-containing complex organization actin filament organization cellular component organization cellular component biogenesis organelle organization cellular component assembly protein-containing complex assembly actin filament-based process cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization negative regulation of cell population proliferation cell population proliferation regulation of smooth muscle cell proliferation smooth muscle cell proliferation negative regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation protein localization regulation of localization establishment of protein localization cellular localization nitrogen compound transport regulation of protein localization transport positive regulation of establishment of protein localization positive regulation of secretion by cell protein localization to extracellular region positive regulation of protein transport localization regulation of secretion by cell secretion by cell positive regulation of secretion cellular macromolecule localization regulation of transport secretion regulation of establishment of protein localization establishment of protein localization to extracellular region export from cell regulation of protein transport protein secretion establishment of localization positive regulation of protein secretion regulation of protein secretion regulation of secretion positive regulation of transport protein transport regulation of cellular localization macromolecule localization positive regulation of protein localization antimicrobial humoral immune response mediated by antimicrobial peptide cell communication neutral lipid metabolic process diacylglycerol biosynthetic process neutral lipid biosynthetic process lipid biosynthetic process acylglycerol biosynthetic process diacylglycerol metabolic process glycerolipid biosynthetic process glycerolipid metabolic process acylglycerol metabolic process lipid metabolic process positive regulation of cell population proliferation endothelial cell proliferation positive regulation of epithelial cell proliferation regulation of endothelial cell proliferation positive regulation of endothelial cell proliferation regulation of epithelial cell proliferation epithelial cell proliferation homeostatic process regulation of phospholipase activity positive regulation of phospholipase activity positive regulation of lipase activity positive regulation of phospholipase A2 activity regulation of phospholipase A2 activity positive regulation of hydrolase activity activation of phospholipase A2 activity regulation of hydrolase activity regulation of lipase activity defense response to Gram-positive bacterium	basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure collagen-containing extracellular matrix intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure collagen-containing extracellular matrix intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol chromosome somatodendritic compartment cell body neuronal cell body extracellular region extracellular space membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle nucleolus intracellular organelle lumen organelle lumen nuclear lumen protein-containing complex angiogenin-PRI complex growth cone axon cell projection distal axon neuron projection plasma membrane bounded cell projection site of polarized growth cytoplasmic vesicle intracellular vesicle vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036816	Ribonuclease A-like domain superfamily	Homologous Superfamily
A	IPR001427	Pancreatic ribonuclease	Family
A	IPR023411	Ribonuclease A, active site	Active Site
A	IPR023412	Ribonuclease A-domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P03950	amyotrophic lateral sclerosis type 9 amyotrophic lateral sclerosis Acute-Phase Reaction amyotrophic lateral sclerosis type 1 non-small cell lung carcinoma ovarian cyst pancreatic intraductal papillary-mucinous carcinoma psoriasis breast carcinoma cutaneous lupus erythematosus invasive ductal breast carcinoma malignant colon neoplasm malignant mesothelioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm amyotrophic lateral sclerosis type 9 amyotrophic lateral sclerosis Acute-Phase Reaction amyotrophic lateral sclerosis type 1 non-small cell lung carcinoma ovarian cyst pancreatic intraductal papillary-mucinous carcinoma psoriasis breast carcinoma cutaneous lupus erythematosus invasive ductal breast carcinoma malignant colon neoplasm malignant mesothelioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm Sjogren syndrome atypical teratoid rhabdoid tumor breast fibroadenoma ductal breast carcinoma in situ lung adenocarcinoma malignant ependymoma neurodegenerative disease ovarian cancer pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia breast cancer corpus luteum cyst glioblastoma lung cancer malignant glioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.