4AJY
von Hippel-Lindau protein-ElonginB-ElonginC complex, bound to Hif1- alpha peptide
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth H] | SCOP2 Family | HIF-1alpha pVHL binding region-like | 8046400 | 4005061 | SCOP2 (2022-06-29) |
C [auth H] | SCOP2 Superfamily | HIF-1alpha pVHL binding region-like | 8095959 | 3002714 | SCOP2 (2022-06-29) |
D [auth V] | SCOP2B Superfamily | VHL | 8041313 | 3000841 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | Skp1_POZ_1 | e4ajyC1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ_1 | ECOD (1.6) |
D [auth V] | VHL | e4ajyV1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: VHL | ECOD (1.6) |
D [auth V] | VHL_C | e4ajyV2 | A: alpha arrays | X: SOCS box-like (From Topology) | H: SOCS box-like (From Topology) | T: SOCS box-like | F: VHL_C | ECOD (1.6) |
A [auth B] | ubiquitin_2 | e4ajyB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth C] | 3.30.710.10 | Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1 | Chain A | CATH (4.3.0) |
D [auth V] | 2.60.40.780 | Mainly Beta | Sandwich | Immunoglobulin-like | von Hippel-Lindau disease tumour suppressor, beta domain | CATH (4.3.0) |
D [auth V] | 1.10.750.10 | Mainly Alpha | Orthogonal Bundle | Elongin C | Chain C, domain 1 | CATH (4.3.0) |
A [auth B] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth C] | PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain |
D [auth V] | PF17211 | VHL box domain (VHL_C) | VHL box domain | This domain represents the short C-terminal alpha helical domain from the VHL protein [1]. | Domain |
D [auth V] | PF01847 | VHL beta domain (VHL) | VHL beta domain | VHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA. | Domain |
A [auth B] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
C [auth H] | HYP | Parent Component: PRO :  AA0030 :  4-hydroxy-L-proline MOD:00039 |