4AOW | pdb_00004aow

Crystal structure of the human Rack1 protein at a resolution of 2.45 angstrom

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4aowa_	All beta proteins	7-bladed beta-propeller	WD40 repeat-like	WD40-repeat	Guanine nucleotide-binding protein subunit beta-2-like 1 (GNB2L1 or RACK1)	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4aowb_	All beta proteins	7-bladed beta-propeller	WD40 repeat-like	WD40-repeat	Guanine nucleotide-binding protein subunit beta-2-like 1 (GNB2L1 or RACK1)	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d4aowc_	All beta proteins	7-bladed beta-propeller	WD40 repeat-like	WD40-repeat	Guanine nucleotide-binding protein subunit beta-2-like 1 (GNB2L1 or RACK1)	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RNA_pol_Rpb4	e4aowA1	A: alpha bundles	X: Flavodoxin-like	H: SH3	T: SH3	F: RNA_pol_Rpb4	ECOD (develop294)
B	PI3K_C2	e4aowB1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: PI3K_C2	ECOD (develop294)
C	PI3K_C2	e4aowC1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: PI3K_C2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
B	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
C	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1	molecular function inhibitor activity channel regulator activity transporter inhibitor activity ion channel inhibitor activity ion channel regulator activity molecular function regulator activity transporter regulator activity channel inhibitor activity protein phosphatase binding phosphatase binding protein binding binding enzyme binding death domain binding molecular function inhibitor activity channel regulator activity transporter inhibitor activity ion channel inhibitor activity ion channel regulator activity molecular function regulator activity transporter regulator activity channel inhibitor activity protein phosphatase binding phosphatase binding protein binding binding enzyme binding death domain binding BH3 domain binding BH domain binding protein domain specific binding cell adhesion molecule binding cadherin binding enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity cysteine-type endopeptidase activator activity involved in apoptotic process cysteine-type endopeptidase regulator activity involved in apoptotic process peptidase activator activity peptidase activator activity involved in apoptotic process molecular adaptor activity protein tyrosine kinase binding kinase binding signaling receptor binding receptor tyrosine kinase binding protein kinase binding identical protein binding translation regulator activity protein-macromolecule adaptor activity signaling adaptor activity SH2 domain binding cyclin binding RNA binding nucleic acid binding protein homodimerization activity protein dimerization activity protein kinase inhibitor activity protein tyrosine kinase inhibitor activity enzyme inhibitor activity protein kinase regulator activity kinase inhibitor activity kinase regulator activity ribonucleoprotein complex binding protein-containing complex binding ribosome binding protein serine/threonine kinase inhibitor activity protein kinase C binding	positive regulation of protein localization to plasma membrane regulation of localization Golgi to plasma membrane transport establishment of protein localization cellular localization regulation of cellular process post-Golgi vesicle-mediated transport regulation of protein localization transport positive regulation of biological process establishment of protein localization to plasma membrane positive regulation of establishment of protein localization Golgi to plasma membrane protein transport vesicle-mediated transport positive regulation of protein transport positive regulation of protein localization to plasma membrane regulation of localization Golgi to plasma membrane transport establishment of protein localization cellular localization regulation of cellular process post-Golgi vesicle-mediated transport regulation of protein localization transport positive regulation of biological process establishment of protein localization to plasma membrane positive regulation of establishment of protein localization Golgi to plasma membrane protein transport vesicle-mediated transport positive regulation of protein transport localization intracellular protein localization regulation of protein localization to membrane positive regulation of cellular process positive regulation of protein localization to cell periphery positive regulation of Golgi to plasma membrane protein transport regulation of biological process protein localization to cell periphery regulation of transport protein localization to plasma membrane establishment of protein localization to membrane biological regulation regulation of establishment of protein localization positive regulation of protein localization to membrane regulation of protein transport regulation of protein localization to cell periphery localization within membrane protein localization to membrane regulation of vesicle-mediated transport establishment of localization vesicle-mediated transport to the plasma membrane positive regulation of transport regulation of Golgi to plasma membrane protein transport protein transport regulation of cellular localization macromolecule localization positive regulation of protein localization cellular process regulation of protein localization to plasma membrane Golgi vesicle transport regulation of protein binding regulation of molecular function negative regulation of protein binding regulation of binding negative regulation of binding negative regulation of molecular function cellular component disassembly ribosome disassembly primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process cellular component organization organelle organization biosynthetic process organelle disassembly translational elongation cytoplasmic translation metabolic process cytoplasmic translational elongation protein metabolic process macromolecule metabolic process cellular component organization or biogenesis rescue of stalled cytosolic ribosome developmental process multicellular organismal process regulation of embryonic development regulation of multicellular organismal development regulation of gastrulation regulation of developmental process embryonic morphogenesis positive regulation of gastrulation embryo development gastrulation positive regulation of developmental process multicellular organism development anatomical structure morphogenesis anatomical structure development positive regulation of embryonic development positive regulation of multicellular organismal process regulation of multicellular organismal process regulation of anatomical structure morphogenesis positive regulation of cellular component organization regulation of cellular component organization protein-containing complex organization positive regulation of cellular component biogenesis regulation of cellular component biogenesis cellular component biogenesis positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death regulation of growth negative regulation of biological process growth negative regulation of cell growth regulation of cell growth cell growth negative regulation of growth negative regulation of cellular process regulation of mitochondrial depolarization positive regulation of membrane depolarization positive regulation of mitochondrial depolarization mitochondrial depolarization regulation of membrane depolarization regulation of mitochondrial membrane potential membrane depolarization regulation of biological quality regulation of membrane potential positive regulation of proteasomal protein catabolic process catabolic process positive regulation of protein metabolic process proteasome-mediated ubiquitin-dependent protein catabolic process regulation of ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of ubiquitin-dependent protein catabolic process modification-dependent macromolecule catabolic process positive regulation of macromolecule metabolic process regulation of protein metabolic process proteasomal protein catabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process regulation of proteasomal protein catabolic process positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process regulation of metabolic process regulation of protein catabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal cellular response to stimulus regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction regulation of signal transduction intracellular signal transduction negative regulation of cell communication cell communication regulation of intracellular signal transduction intracellular signaling cassette signal transduction regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication phosphatidylinositol 3-kinase/protein kinase B signal transduction adenylate cyclase-activating G protein-coupled receptor signaling pathway adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway regulation of G protein-coupled receptor signaling pathway positive regulation of cell communication positive regulation of signal transduction regulation of intrinsic apoptotic signaling pathway positive regulation of apoptotic signaling pathway positive regulation of response to stimulus intrinsic apoptotic signaling pathway positive regulation of intracellular signal transduction apoptotic signaling pathway positive regulation of intrinsic apoptotic signaling pathway regulation of apoptotic signaling pathway positive regulation of signaling cell division regulation of cell division pigmentation regulation of cellular response to stress endoplasmic reticulum unfolded protein response regulation of response to endoplasmic reticulum stress regulation of endoplasmic reticulum unfolded protein response cellular response to stress response to stress regulation of response to stress negative regulation of endoplasmic reticulum unfolded protein response response to endoplasmic reticulum stress negative regulation of response to endoplasmic reticulum stress cellular response to topologically incorrect protein cellular response to unfolded protein response to unfolded protein response to topologically incorrect protein negative regulation of Wnt signaling pathway Wnt signaling pathway cell surface receptor signaling pathway regulation of Wnt signaling pathway post-transcriptional regulation of gene expression negative regulation of translation negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of metabolic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process homeostatic process response to oxygen-containing compound cellular response to glucose stimulus intracellular glucose homeostasis cellular response to oxygen-containing compound response to hexose cellular response to carbohydrate stimulus cellular response to chemical stimulus cellular homeostasis response to monosaccharide response to carbohydrate chemical homeostasis response to glucose response to chemical glucose homeostasis carbohydrate homeostasis cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus positive regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity regulation of translational frameshifting regulation of translational elongation negative regulation of translational frameshifting translational frameshifting negative regulation of translational elongation regulation of hydrogen peroxide-mediated programmed cell death programmed cell death in response to reactive oxygen species negative regulation of apoptotic signaling pathway negative regulation of programmed cell death negative regulation of apoptotic process intrinsic apoptotic signaling pathway in response to oxidative stress regulation of oxidative stress-induced intrinsic apoptotic signaling pathway cellular response to oxidative stress cellular response to chemical stress negative regulation of hydrogen peroxide-mediated programmed cell death cellular response to reactive oxygen species hydrogen peroxide-mediated programmed cell death negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway intrinsic apoptotic signaling pathway in response to hydrogen peroxide response to reactive oxygen species negative regulation of intrinsic apoptotic signaling pathway response to oxidative stress negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide negative regulation of smoothened signaling pathway regulation of smoothened signaling pathway smoothened signaling pathway rhythmic process cellular response to endogenous stimulus cellular response to growth factor stimulus response to endogenous stimulus response to growth factor positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion import into cell negative regulation of transport negative regulation of endocytosis negative regulation of phagocytosis phagocytosis regulation of endocytosis negative regulation of cellular component organization regulation of phagocytosis endocytosis positive regulation of phosphorylation regulation of protein modification process regulation of protein phosphorylation positive regulation of phosphate metabolic process positive regulation of protein modification process phosphate-containing compound metabolic process positive regulation of protein phosphorylation phosphorus metabolic process protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation regulation of phosphorus metabolic process regulation of phosphorylation cell cycle regulation of cell cycle regulation of establishment of cell polarity regulation of establishment or maintenance of cell polarity establishment of cell polarity establishment or maintenance of cell polarity	somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex membraneless organelle ribosome IRE1-RACK1-PP2A complex perinuclear region of cytoplasm phagocytic cup cell periphery plasma membrane membrane mitochondrion intracellular membrane-bounded organelle midbody nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen cytosolic small ribosomal subunit cytosolic ribosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR019775	WD40 repeat, conserved site	Conserved Site
A, B, C	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
A, B, C	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B, C	IPR045223	Small ribosomal subunit protein RACK1-like	Family
A, B, C	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B, C	IPR001680	WD40 repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: P63244	squamous cell carcinoma plasma cell myeloma Alcoholic Intoxication, Chronic bipolar disorder glioblastoma lymphoplasmacytic lymphoma medulloblastoma oral cavity neoplasm pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor astrocytic tumor cystic fibrosis large cell medulloblastoma malignant glioma osteosarcoma squamous cell carcinoma plasma cell myeloma Alcoholic Intoxication, Chronic bipolar disorder glioblastoma lymphoplasmacytic lymphoma medulloblastoma oral cavity neoplasm pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor astrocytic tumor cystic fibrosis large cell medulloblastoma malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm psoriasis atypical teratoid rhabdoid tumor diabetes mellitus lung cancer oligodendroglioma ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.