V. cholera biofilm scaffolding protein RbmA in complex with 18-crown- 6


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ABT_3987-like_Ne4beiA3 A: alpha arraysX: Fusion glycoprotein F2H: Fusion glycoprotein F2T: Fusion glycoprotein F2F: BT_3987-like_NECOD (v295.2)
CBT_3987-like_Ne4beiC3 A: alpha arraysX: Fusion glycoprotein F2H: Fusion glycoprotein F2T: Fusion glycoprotein F2F: BT_3987-like_NECOD (v295.2)
DV-sete4beiD3 A: alpha arraysX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v295.2)
EBT_3987-like_Ne4beiE3 A: alpha arraysX: Fusion glycoprotein F2H: Fusion glycoprotein F2T: Fusion glycoprotein F2F: BT_3987-like_NECOD (v295.2)
FBT_3987-like_Ne4beiF3 A: alpha arraysX: Fusion glycoprotein F2H: Fusion glycoprotein F2T: Fusion glycoprotein F2F: BT_3987-like_NECOD (v295.2)
GBT_3987-like_Ne4beiG3 A: alpha arraysX: Fusion glycoprotein F2H: Fusion glycoprotein F2T: Fusion glycoprotein F2F: BT_3987-like_NECOD (v295.2)
HV-sete4beiH3 A: alpha arraysX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v295.2)
BBT_3987-like_Ne4beiB3 A: alpha arraysX: Fusion glycoprotein F2H: Fusion glycoprotein F2T: Fusion glycoprotein F2F: BT_3987-like_NECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.3880 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
C2.60.40.3880 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
D2.60.40.3880 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
E2.60.40.3880 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
F2.60.40.3880 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
G2.60.40.3880 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
H2.60.40.3880 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
B2.60.40.3880 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF22021RbmA-like, FnIII domain (RbmA-like_FnIII)RbmA-like, FnIII domainThis entry represents both fibronectin type III (FnIII) domains found in RbmA protein from Vibrio cholerae (Swiss:Q9KTH4), a biofilm matrix protein essential for both maintenance of rugose colony morphology and development of wild-type biofilm archit ...This entry represents both fibronectin type III (FnIII) domains found in RbmA protein from Vibrio cholerae (Swiss:Q9KTH4), a biofilm matrix protein essential for both maintenance of rugose colony morphology and development of wild-type biofilm architecture. RbmA contains two FnIII domains connected by a linker segment. The two folds run antiparallel to each other but do not form extensive interactions. Each FnIII domain shows a beta-sandwich comprised of three beta-sheets plus four beta-sheets [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR054171RbmA-like, FnIII domainDomain