crystal structure of the human EphA4 ectodomain in complex with human ephrin A5 (amine-methylated sample)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | FAA_hydrolase | e4bk5A1 | A: a/b three-layered sandwiches | X: amino-terminal domain of OmpATb | H: amino-terminal domain of OmpATb | T: amino-terminal domain of OmpATb | F: FAA_hydrolase | ECOD (v294.1) |
| A | Myb_DNA-binding | e4bk5A4 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Osmotin-like | T: Osmotin-like | F: Myb_DNA-binding | ECOD (v294.1) |
| B [auth C] | PEPCK_N | e4bk5C1 | A: a/b three-layered sandwiches | X: PBZ domain | H: PBZ domain | T: PBZ domain | F: PEPCK_N | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
| A | 2.60.40.1770 | Mainly Beta | Sandwich | Immunoglobulin-like | ephrin a2 ectodomain | CATH (4.3.0) |
| A | 2.10.50.10 | Mainly Beta | Ribbon | Tumor Necrosis Factor Receptor, subunit A | domain 2 | CATH (4.3.0) |
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B [auth C] | 2.60.40.420 | Mainly Beta | Sandwich | Immunoglobulin-like | Cupredoxins - blue copper proteins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01404 | Ephrin receptor ligand binding domain (Ephrin_lbd) | Ephrin receptor ligand binding domain | The Eph receptors, which bind to ephrins Pfam:PF00812 are a large family of receptor tyrosine kinases. This family represents the amino terminal domain which binds the ephrin ligand [1]. | Domain | |
| PF25599 | Ephrin cysteine rich domain (Ephrin_CRD) | Ephrin cysteine rich domain | This entry represents the cysteine-rich domain found in ephrin proteins. Ephrins are important cell surface proteins that act as ligands for Eph receptor tyrosine kinases | Domain | |
| PF00041 | Fibronectin type III domain (fn3) | Fibronectin type III domain | Domain | ||














