4D67 | pdb_00004d67

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

External Resource: Annotation

Domain Annotation: ECOD Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MNNL	e4d67A1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
B	VipB_2	e4d67B1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: VipB_2	ECOD (v295)
C	AMP-binding	e4d67C1	A: alpha arrays	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: AMP-binding	ECOD (v295)
D	VipB_2	e4d67D1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: VipB_2	ECOD (v295)
E	Ribosomal_S9	e4d67E1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ribosomal_S9	ECOD (v295)
F	VipB_2	e4d67F1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: VipB_2	ECOD (v295)
G	MNNL	e4d67G1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
H	MNNL	e4d67H1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
I	MNNL	e4d67I1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
J	MNNL	e4d67J1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
K [auth L]	V_ATPase_I	e4d67L1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: V_ATPase_I	ECOD (v295)
L [auth M]	MNNL	e4d67M1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
M [auth N]	MNNL	e4d67N1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
N [auth O]	MNNL	e4d67O1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
O [auth P]	MNNL	e4d67P1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
P [auth Q]	MNNL	e4d67Q1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
Q [auth R]	MNNL	e4d67R1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
R [auth S]	N6_Mtase	e4d67S1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: N6_Mtase	ECOD (v295)
S [auth T]	N6_Mtase	e4d67T1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: N6_Mtase	ECOD (v295)
U [auth V]	MNNL	e4d67V1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
V [auth W]	MNNL	e4d67W1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
W [auth X]	N6_Mtase	e4d67X1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: N6_Mtase	ECOD (v295)
X [auth Y]	MNNL	e4d67Y1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
Y [auth Z]	N6_Mtase	e4d67Z1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: N6_Mtase	ECOD (v295)
Z [auth a]	Tudor_2	e4d67a1	A: alpha arrays	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F: Tudor_2	ECOD (v295)
AA [auth b]	V_ATPase_I	e4d67b1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: V_ATPase_I	ECOD (v295)
BA [auth c]	MNNL	e4d67c1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
CA [auth d]	MNNL	e4d67d1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
DA [auth e]	MNNL	e4d67e1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
EA [auth f]	MNNL	e4d67f1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
FA [auth g]	V_ATPase_I	e4d67g1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: V_ATPase_I	ECOD (v295)
GA [auth h]	N6_Mtase	e4d67h1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: N6_Mtase	ECOD (v295)
HA [auth i]	Ig_3	e4d67i1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: DNA mismatch repair protein MutL regulatory subdomain	T: DNA mismatch repair protein MutL regulatory subdomain	F: Ig_3	ECOD (v295)
IA [auth j]	MNNL	e4d67j1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
JA [auth k]	V_ATPase_I	e4d67k1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: V_ATPase_I	ECOD (v295)
KA [auth l]	MNNL	e4d67l1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
LA [auth m]	Ig_3	e4d67m1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: DNA mismatch repair protein MutL regulatory subdomain	T: DNA mismatch repair protein MutL regulatory subdomain	F: Ig_3	ECOD (v295)
MA [auth n]	VipB_2	e4d67n1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: VipB_2	ECOD (v295)
NA [auth o]	VipB_2	e4d67o1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: DHS-like NAD/FAD-binding domain	F: VipB_2	ECOD (v295)
OA [auth p]	MNNL	e4d67p1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
PA [auth t]	Mtrc-MtrF_II-IV_dom	e4d67t1	A: alpha arrays	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: Mtrc-MtrF_II-IV_dom	ECOD (v295)
QA [auth u]	MNNL	e4d67u1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)
T [auth U]	MNNL	e4d67U1	A: alpha arrays	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: MNNL	ECOD (v295)

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.